G308707


Basic Information

Item Value
gene id G308707
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 15874005 ~ 15875206 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU365710
tGGACATTATTAGTTTTGTACATAACGAAATATAAACCATTTAATATATAAACCATATAATAcaacaaaacatgcaaaagtAAAACCATAGATCATAGTAAATTCTATTCAATAAGTCAAATTCTCCAGATTTGGAAATATCCTCATATGGCCTGGAgtcaatattttaattaaaacactcAATTTCATTAAATTATGAAAACGTACAGCTTGTATCAGGTAATCTTTTCCCCTATCTTTTAAGAAAGCCAAGTGTCAACATTTCCATTAATCTGTTAATCTCTGCTTCATTTAATCCTATTCTAAGGTGCTCCACACAGCATACATAATCAGCTAATAATAAAAGCCCAAAGGAACACAATCATCTCTATATTCCGGTCTCAATATCTCCTGAGATCTCtgtctatttttaaacattaatgaaatGCGTTAATTAAAACTCAGCAGGTTCATTGGAAATCAGTATTCGGCATCCGAGTGGACCTCCGTCTGCCTCTCCCTTACATTAGAGATGTCATCTGATATGCAACATTAGTAGCCAAATTTGAATGCATCCACTCTGAAATCTCCCAGCAGTCAGCGAGAGGACGGACGTCTTAATGCTTTCTCATTGGCACCTTGTTAATATTTATGAGCGTGAAGAAAATAGCATGCAAATCCATCTATGGCCCTGCATTTGCATGATTATGCCAAGGGAATTCAAGTAGTGAAATACAAACATACTTTTGACTGTCTGACTGTTAAATGTTCCCTCAAAGTAGTTTCAGCCCCAGCGGTTTTAGCGAAATAGAACGACTTTTCTGTTTGTGATTTCATGCTCTTTGAATTTTATGACTGTATAATGCAGTGGAGTCAAATTTGtttattacaaacaaaaaaaaaagcatgtcatTGAATTAAATATCTGCCAAAAATATTCATCACACAGTTCTCATTTGCACAAAGAAattccacaagatggcagtagACGCATGCTTCTAGGGGTGAAAAGCATGAATGTAATgaaacttttttcctttttacattatttacttcACCATGCAGTCTATTCAAAATTACTGTCAATGTTCATTTCTGCATAATGTAAACATGACCTGCTACAccatttacacattacacaagCACGGTTTTACTTTTCCAGTGGTAtcaatatttacaaatgtaaatatgaattaGAGATATTTAATCAAATGTGGTGCCTC

Function

GO:

id name namespace
GO:0005102 signaling receptor binding molecular_function
GO:0071855 neuropeptide receptor binding molecular_function
GO:0031841 neuropeptide Y receptor binding molecular_function
GO:0031843 type 2 neuropeptide Y receptor binding molecular_function
GO:0001664 G protein-coupled receptor binding molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04723 Retrograde endocannabinoid signaling
ko05032 Morphine addiction
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU365710 True 1202 lncRNA 0.34 1 15874005 15875206

Neighbor

gene id symbol gene type direction distance location
rbm15b rbm15b coding upstream 484877 15385294 ~ 15389128 (+)
manf manf,LOC107592842,LOC107691893,LOC107750980,LOC106583751 coding upstream 491057 15375847 ~ 15382948 (+)
dock3 dock3 coding upstream 505875 15138351 ~ 15368130 (+)
si:dkey-49n23.1 si:dkey-49n23.1,LOC108255172,LOC108436691,LOC107719940,LOC107571036 coding upstream 747607 15064877 ~ 15126398 (+)
ssuh2.1 LOC108255262,LOC108436692 coding upstream 812005 15045544 ~ 15062000 (+)
ccdc66 NA coding downstream 797614 16672820 ~ 16687543 (+)
atp6ap1la atp6ap1l,LOC108254970,LOC107680564 coding downstream 1006796 16882002 ~ 16891308 (+)
pde12 pde12 coding downstream 1018025 16893231 ~ 16897114 (+)
LOC113537970 arf4,LOC108254967 coding downstream 1035199 16910405 ~ 16912976 (+)
slmapa slmap coding downstream 1069258 16944464 ~ 16998819 (+)
G308404 NA non-coding upstream 460183 15412099 ~ 15413822 (+)
LOC113537967 NA non-coding upstream 466364 15393609 ~ 15407641 (+)
G308018 NA non-coding upstream 1073863 14798973 ~ 14800142 (+)
G307997 NA non-coding upstream 1093247 14699997 ~ 14780758 (+)
LOC113537908 NA non-coding upstream 1110831 14760831 ~ 14763174 (+)
G308737 LOC105913228,LOC107592839,LOC107701594,LOC108431596,LOC107691887,LOC100331190 non-coding downstream 118189 15993395 ~ 15994043 (+)
G308758 LOC108280992,LOC108431596,LOC107756932,LOC107592839 non-coding downstream 146010 16021216 ~ 16022142 (+)
G308760 NA non-coding downstream 152683 16027889 ~ 16028286 (+)
G308764 NA non-coding downstream 162210 16037416 ~ 16037632 (+)
G308765 NA non-coding downstream 162451 16037657 ~ 16037976 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other upstream 74115 15756890 ~ 15799890 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other upstream 1349029 14514592 ~ 14524976 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other upstream 1397188 14179783 ~ 14476817 (+)
ippk ippk,LOC107755999,LOC106566243 other upstream 2181093 13674354 ~ 13692912 (+)
G306480 tuba1c,LOC103148207,LOC106920718,LOC102311436,LOC101065103 other upstream 3411469 12457601 ~ 12462536 (+)
amigo3 amigo3 other downstream 614155 16489361 ~ 16501684 (+)
LOC113537865 LOC108280979 other downstream 1385773 17260979 ~ 17263663 (+)
snrpe snrpe other downstream 2812191 18687397 ~ 18692014 (+)
G310681 LOC108254836 other downstream 3211819 19087025 ~ 19087806 (+)
svbp NA other downstream 3619552 19494758 ~ 19498671 (+)

Expression


Co-expression Network