G308758 (LOC108280992,LOC108431596,LOC107756932,LOC107592839)


Basic Information

Item Value
gene id G308758
gene name LOC108280992,LOC108431596,LOC107756932,LOC107592839
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 16021216 ~ 16022142 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU365764
CTGCAGACTGAGCTGTTCCAAAGAATATAGGAATGAAGGCCAGCCAAACGATACAGGTGGTGTACATGGTGAAGCCAATGGGCTTGGCCTCATTGAAGTTCTCGGGAACTCCTCGTGTCTTGATGGCATAAACCGTGCATGTGACCATGAGCAAAATACTGTATCCCAGTGAGcaaattatttgtaaatctgTGATGTCACACTTGAGCACACCCCTAGCTTTGTCTGGATTGATGGTTTTCTGTTCATCATAATCGATTATTGTGTTCGGAGGATCCACCCCAAACCATATGAAGACTCCAAGAAGCTGCACTGAAATGAGGCTTGACGTTATTGCCAGCTGGGATGTTGGACTGATCAGTCTAGGTGGTGTCACCGATTTCTTCCCCTCTTCAAAGATGCGGTAAATTCGATTCGTCTTGGTTAGCAGTGCAGCGTAGCTGATACACATCCCCAAGCCGAGGAAGATGCGCCTGAAGGAGCAGACGGCTGCATCAGGTTTGGCGATCATCACAAAGGTTATGATGTAGCAAAGGAAGATCCCTGTCAGGAGCACATAGCTGAGTTCCCGTCCTGAAGCCCGTACAATGGGTGTGTCGTTGTAGCGGATGAATGTAGCCATGACGAAGATGGTGGCCACGATCCCGAGCATTGCCAAGAAGACAGGGATGACTGCCCAGGGAGAGTGCCACTCCAGCTTGACGATGGGGATGGGCTGGCACCCGGTTCGGTTGGCATTGGGCCGCATGTTGTAGGCGCACAGCTTGCACGTTGTTTCGTCATACTGGTACTGGTAGCCATCACAGGGCTCGCAGTGCCAGCAGCATGGCATCCCTTTTACCGTCTTCTTCCGCTGACCAGTCTTACACGGCAGGCTGCAGATGGAACCAGGAATTTCGACATCACCACTGGGCCACTGCATGTCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU365764 True 927 lncRNA 0.51 1 16021216 16022142

Neighbor

gene id symbol gene type direction distance location
nicn1 nicn1 coding upstream 143950 15863456 ~ 15877266 (+)
rbm15b rbm15b coding upstream 632088 15385294 ~ 15389128 (+)
manf manf,LOC107592842,LOC107691893,LOC107750980,LOC106583751 coding upstream 638268 15375847 ~ 15382948 (+)
dock3 dock3 coding upstream 653086 15138351 ~ 15368130 (+)
si:dkey-49n23.1 si:dkey-49n23.1,LOC108255172,LOC108436691,LOC107719940,LOC107571036 coding upstream 894818 15064877 ~ 15126398 (+)
ccdc66 NA coding downstream 650678 16672820 ~ 16687543 (+)
atp6ap1la atp6ap1l,LOC108254970,LOC107680564 coding downstream 859860 16882002 ~ 16891308 (+)
pde12 pde12 coding downstream 871089 16893231 ~ 16897114 (+)
LOC113537970 arf4,LOC108254967 coding downstream 888263 16910405 ~ 16912976 (+)
slmapa slmap coding downstream 922322 16944464 ~ 16998819 (+)
G308737 LOC105913228,LOC107592839,LOC107701594,LOC108431596,LOC107691887,LOC100331190 non-coding upstream 27173 15993395 ~ 15994043 (+)
G308707 NA non-coding upstream 146010 15874005 ~ 15875206 (+)
G308404 NA non-coding upstream 607394 15412099 ~ 15413822 (+)
LOC113537967 NA non-coding upstream 613575 15393609 ~ 15407641 (+)
G308018 NA non-coding upstream 1221074 14798973 ~ 14800142 (+)
G308760 NA non-coding downstream 5747 16027889 ~ 16028286 (+)
G308764 NA non-coding downstream 15274 16037416 ~ 16037632 (+)
G308765 NA non-coding downstream 15515 16037657 ~ 16037976 (+)
G308792 NA non-coding downstream 59533 16081675 ~ 16081903 (+)
G308799 NA non-coding downstream 68175 16090317 ~ 16090530 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other upstream 221326 15756890 ~ 15799890 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other upstream 1496240 14514592 ~ 14524976 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other upstream 1544399 14179783 ~ 14476817 (+)
ippk ippk,LOC107755999,LOC106566243 other upstream 2328304 13674354 ~ 13692912 (+)
G306480 tuba1c,LOC103148207,LOC106920718,LOC102311436,LOC101065103 other upstream 3558680 12457601 ~ 12462536 (+)
amigo3 amigo3 other downstream 467219 16489361 ~ 16501684 (+)
LOC113537865 LOC108280979 other downstream 1238837 17260979 ~ 17263663 (+)
snrpe snrpe other downstream 2665255 18687397 ~ 18692014 (+)
G310681 LOC108254836 other downstream 3064883 19087025 ~ 19087806 (+)
svbp NA other downstream 3472616 19494758 ~ 19498671 (+)

Expression


Co-expression Network