G308827


Basic Information

Item Value
gene id G308827
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 16119831 ~ 16120289 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU365836
TTACAAATCATTCTGTGAGAAAAACAATTAGCAGAAACTTAGTCTGATccatgtaatgtgtgtgataaTTATGTATATGTCATGGGTGGACTAATCAGCGTCTGGGACCAGCACAGCAGCCCAGGACATAACCCCTCCCCGCAAGCACAGTCTAGCACAGTCCAGAATTCTAATCAGatgctcatttcctgtttacttcctggtttGCTGTCTATTTAAGGACATATATTTCAGCTATTCATGGTGAAGTCTTTCCATTCACTTGAGTTGAGGATGTTTCCCCTTATTGCCTATTCTGTGTTTTGACCATTTTGCTAAGCCATTTTTGCTTTCTTTGGATTACCGTTTTGATTTGACGTTTGATTTTGATTAGAATATTGTGTCTGAACGAGACTGATTTTGGATTGTGATTTGATGAGCCATTCTTCTACCGAAGTTTGCTTAAAAGACTTGTTATAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU365836 True 459 lncRNA 0.38 1 16119831 16120289

Neighbor

gene id symbol gene type direction distance location
nicn1 nicn1 coding upstream 242565 15863456 ~ 15877266 (+)
rbm15b rbm15b coding upstream 730703 15385294 ~ 15389128 (+)
manf manf,LOC107592842,LOC107691893,LOC107750980,LOC106583751 coding upstream 736883 15375847 ~ 15382948 (+)
dock3 dock3 coding upstream 751701 15138351 ~ 15368130 (+)
si:dkey-49n23.1 si:dkey-49n23.1,LOC108255172,LOC108436691,LOC107719940,LOC107571036 coding upstream 993433 15064877 ~ 15126398 (+)
ccdc66 NA coding downstream 552531 16672820 ~ 16687543 (+)
atp6ap1la atp6ap1l,LOC108254970,LOC107680564 coding downstream 761713 16882002 ~ 16891308 (+)
pde12 pde12 coding downstream 772942 16893231 ~ 16897114 (+)
LOC113537970 arf4,LOC108254967 coding downstream 790116 16910405 ~ 16912976 (+)
slmapa slmap coding downstream 824175 16944464 ~ 16998819 (+)
G308822 NA non-coding upstream 6824 16112799 ~ 16113007 (+)
G308810 NA non-coding upstream 17990 16101612 ~ 16101841 (+)
G308799 NA non-coding upstream 29301 16090317 ~ 16090530 (+)
G308792 NA non-coding upstream 37928 16081675 ~ 16081903 (+)
G308765 NA non-coding upstream 81855 16037657 ~ 16037976 (+)
G308915 NA non-coding downstream 185507 16305796 ~ 16306003 (+)
G309056 NA non-coding downstream 474848 16595137 ~ 16595350 (+)
G309135 rps23,LOC106566095 non-coding downstream 676842 16797131 ~ 16882513 (+)
G309170 NA non-coding downstream 741857 16862146 ~ 16864645 (+)
G309184 NA non-coding downstream 782892 16903181 ~ 17000024 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other upstream 319941 15756890 ~ 15799890 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other upstream 1594855 14514592 ~ 14524976 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other upstream 1643014 14179783 ~ 14476817 (+)
ippk ippk,LOC107755999,LOC106566243 other upstream 2426919 13674354 ~ 13692912 (+)
G306480 tuba1c,LOC103148207,LOC106920718,LOC102311436,LOC101065103 other upstream 3657295 12457601 ~ 12462536 (+)
amigo3 amigo3 other downstream 369072 16489361 ~ 16501684 (+)
LOC113537865 LOC108280979 other downstream 1140690 17260979 ~ 17263663 (+)
snrpe snrpe other downstream 2567108 18687397 ~ 18692014 (+)
G310681 LOC108254836 other downstream 2966736 19087025 ~ 19087806 (+)
svbp NA other downstream 3374469 19494758 ~ 19498671 (+)

Expression


Co-expression Network