G309201


Basic Information

Item Value
gene id G309201
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 16968396 ~ 16969437 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU366254
TTTcagatgaaaacatgacattcactCAAGTTCAGTTTAAAAcgtttcctttttattttttaatacttttaaaagtACAGTTTTGGCTACTTCTACTTTTAAGTGAGGTAAATGTAGGAACGTTATCTATACTTTCATTTAAGTGTAATTTCTCAATACGTTTTGCAAAGGTTGCCGTGTTTACTtataaaaacagtcagtctttTATCAGAATGAGTTGACAGATTAACAGATTAGGCTATTTATCTCTCCAGTGTCAGGTTATATGACAGCATATCATCAGAGTTATGTAAACAGAATACAGTGCACTTCTCAGTCATCTGTTAGCCTTTAAAGACATTATGAAGTGTTGCTGTCAGCTGGTGCAGTTGGAGGTCACACAAATCAGCTTCACTGTTTATTTGGCTTTGTGTTGAGTTGTTGCATAGTATATGTAGTAATTTAGATGATTGCTGACATGTAGACCCTCTCTGAACGTGAAGCAGGACTGCAGgttatgcctgtgtgtgtgtgtgtgtgtgtatcactggcATGCCAGCGAACGCTTCCCTGAGACGTGTAGCTGGCTCACAATGCGTGCCGCATACCCAGTGCTGGCAAAGCCTGTGGAAAGGAGGTGTACTGTACACTGGCATCCATGCTAATTCTAGCAGCATGGCTGTTTTTAGATGCGTTCCTCATTTAGCGCTAAACCTGTAACTTAAGTTCAGGTCCATTGAAGGAAATTCCAAATTCTAGTAGTTAACTGACTAACCTTGgcttgttgttatttttttacctCTGAGCGATCTGGCTGAGTCGAGGTATTTTTGTTCTCTGAATGAATGTGTAGGAGTTTTTATGAGTGTACACCTAAAAAACATGGACCAACAACCTATCGTTAAATCAGAGAAGTGTTGTGTCGCACTACTTTCTCTTGTTTACTGAGTCAGTCCTGCCTCACGCTCTACAGTTATTTCCACCTCCGGTATTAGTTCCTACGGACAAGCAGTTTTCCAgccttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU366254 True 1006 lncRNA 0.40 2 16968396 16969437

Neighbor

gene id symbol gene type direction distance location
LOC113537970 arf4,LOC108254967 coding upstream 55420 16910405 ~ 16912976 (+)
pde12 pde12 coding upstream 71282 16893231 ~ 16897114 (+)
atp6ap1la atp6ap1l,LOC108254970,LOC107680564 coding upstream 77088 16882002 ~ 16891308 (+)
ccdc66 NA coding upstream 280853 16672820 ~ 16687543 (+)
nicn1 nicn1 coding upstream 1091130 15863456 ~ 15877266 (+)
LOC113537897 flnb,LOC107657976,LOC107712990 coding downstream 37170 17006607 ~ 17075644 (+)
LOC113537900 LOC108254753 coding downstream 107109 17076546 ~ 17078049 (+)
abhd6a abhd6,abhd6a,LOC107657977,LOC105904082 coding downstream 117340 17086777 ~ 17100430 (+)
LOC113538050 LOC108254737,LOC108281062 coding downstream 136429 17105866 ~ 17107916 (+)
LOC113537879 NA coding downstream 142106 17111543 ~ 17115161 (+)
G309194 NA non-coding upstream 49241 16917999 ~ 16919155 (+)
G309187 NA non-coding upstream 64139 16903857 ~ 16904257 (+)
G309135 rps23,LOC106566095 non-coding upstream 85883 16797131 ~ 16882513 (+)
G309170 NA non-coding upstream 103751 16862146 ~ 16864645 (+)
G309056 NA non-coding upstream 373046 16595137 ~ 16595350 (+)
G309208 NA non-coding downstream 46199 17015636 ~ 17016244 (+)
G309389 NA non-coding downstream 202825 17172262 ~ 17184538 (+)
G309461 inpp1 non-coding downstream 275263 17244700 ~ 17248075 (+)
LOC117599872 NA non-coding downstream 307003 17276440 ~ 17277832 (+)
G309525 NA non-coding downstream 414351 17383788 ~ 17384010 (+)
amigo3 amigo3 other upstream 466712 16489361 ~ 16501684 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other upstream 1168506 15756890 ~ 15799890 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other upstream 2443420 14514592 ~ 14524976 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other upstream 2491579 14179783 ~ 14476817 (+)
ippk ippk,LOC107755999,LOC106566243 other upstream 3275484 13674354 ~ 13692912 (+)
LOC113537865 LOC108280979 other downstream 291542 17260979 ~ 17263663 (+)
snrpe snrpe other downstream 1717960 18687397 ~ 18692014 (+)
G310681 LOC108254836 other downstream 2117588 19087025 ~ 19087806 (+)
svbp NA other downstream 2525321 19494758 ~ 19498671 (+)
phf13 phf13 other downstream 2538752 19508189 ~ 19517178 (+)

Expression


Co-expression Network