G309208


Basic Information

Item Value
gene id G309208
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 17015636 ~ 17016244 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU366262
CTCAGCAACAACAGGGAAAAAGTCAAGTTTATAATTTGCTGATTTGAACTGAAAGGTTATTCTGTGAAATGTGTCAAACTTTAGACCAGGAGGGTTACGACTCAGTAGAGTGTAGCATTTTAGAGTTTACGAGGACATTTGTGGGTCATATTTGGTCTGTTAAAAATGAGGAAGTCAATCTCTGTAGGCCGGTGACACTCCAAGGCTAGACTTTGACACTCCTTCCTTACATGATGAGCTCATCTTATAGGTTCTTATCAAAGCATTGGGTGTGAACCTGAATTGCTACACGTTCTGTGggtgaaaagaaaaatttcCGGTCTGTTAAAAATACTCGTTATCACACTCCATTTAGCGCattctgaaatgtttaattCGTCTCACttttttttttttggcatgacATGATTTTCCAACTTTTacttacagaaaaatgaaagaaaaaatacttGCAATATAATTCttcaactttttctttttttgtattttctgttcCACTTTCTGTTTTGACCCTGGTTTTGTACAGGAAACCCCATCACTTAAAACCTGTCCTGCTGGCTCTTCATGTGCCTGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU366262 True 575 lncRNA 0.37 2 17015636 17016244

Neighbor

gene id symbol gene type direction distance location
slmapa slmap coding upstream 16817 16944464 ~ 16998819 (+)
LOC113537970 arf4,LOC108254967 coding upstream 102660 16910405 ~ 16912976 (+)
pde12 pde12 coding upstream 118522 16893231 ~ 16897114 (+)
atp6ap1la atp6ap1l,LOC108254970,LOC107680564 coding upstream 124328 16882002 ~ 16891308 (+)
ccdc66 NA coding upstream 328093 16672820 ~ 16687543 (+)
LOC113537900 LOC108254753 coding downstream 60302 17076546 ~ 17078049 (+)
abhd6a abhd6,abhd6a,LOC107657977,LOC105904082 coding downstream 70533 17086777 ~ 17100430 (+)
LOC113538050 LOC108254737,LOC108281062 coding downstream 89622 17105866 ~ 17107916 (+)
LOC113537879 NA coding downstream 95299 17111543 ~ 17115161 (+)
LOC113538038 LOC108254738,LOC108254739,LOC108254741,LOC108254740 coding downstream 117643 17133887 ~ 17135114 (+)
G309184 NA non-coding upstream 15612 16903181 ~ 17000024 (+)
G309201 NA non-coding upstream 46199 16968396 ~ 16969437 (+)
G309194 NA non-coding upstream 96481 16917999 ~ 16919155 (+)
G309187 NA non-coding upstream 111379 16903857 ~ 16904257 (+)
G309135 rps23,LOC106566095 non-coding upstream 133123 16797131 ~ 16882513 (+)
G309389 NA non-coding downstream 156018 17172262 ~ 17184538 (+)
G309461 inpp1 non-coding downstream 228456 17244700 ~ 17248075 (+)
LOC117599872 NA non-coding downstream 260196 17276440 ~ 17277832 (+)
G309525 NA non-coding downstream 367544 17383788 ~ 17384010 (+)
G309933 rpl22,LOC100304536,LOC103047485,LOC106566811,LOC108414460 non-coding downstream 903292 17919536 ~ 18018096 (+)
amigo3 amigo3 other upstream 513952 16489361 ~ 16501684 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other upstream 1215746 15756890 ~ 15799890 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other upstream 2490660 14514592 ~ 14524976 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other upstream 2538819 14179783 ~ 14476817 (+)
ippk ippk,LOC107755999,LOC106566243 other upstream 3322724 13674354 ~ 13692912 (+)
LOC113537865 LOC108280979 other downstream 244735 17260979 ~ 17263663 (+)
snrpe snrpe other downstream 1671153 18687397 ~ 18692014 (+)
G310681 LOC108254836 other downstream 2070781 19087025 ~ 19087806 (+)
svbp NA other downstream 2478514 19494758 ~ 19498671 (+)
phf13 phf13 other downstream 2491945 19508189 ~ 19517178 (+)

Expression


Co-expression Network