G309389


Basic Information

Item Value
gene id G309389
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 17172262 ~ 17184538 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU366466
tttttgtttttttTACTGTTCAACTATATCTTTATTGAGTCACAGCTCCAGATTCCCTTGTTTCACTAACAGCATTACATAGGATCAGTATgatattaataacaaaatttcCACCAAAGTTGAACAGGAAGTTCACTTAAAATTCATAACTGCTGGAGACTCCATTACTGTCAGTCAAGTTAAGGTCAAAACTGCTACAAGCTCAGAGCCAATTTCCGCATGTCTATCTGTTTGACCATTATAGCACTAAGCAGCATCataatattatgttttaattaGGTATTAATAagctttttgtatttatttaatcaattaCAGCATCTAACTCAAGTTTAGATTCAGACAAGAAAGTAGCCCATTTCAGGGTAATCTAACTCAACCTGTATTTACACTACTGTAACACTTTTATACACTGATGGCTGGGGTAAACTCCCAGGTGAGGATTATTTTAAAGATAAGTAAGCAAAAAACACACTACATATAAGATTCCacattgaaacaaaaaaaaattaaaccagatGACAGTAACAGAAATTATCAGTGCAATTCTGATCCTCTTGCTTTAATCATCACTATTAAAAGTTGCAGTATCGTCTGATGACGTGTGTGTGGGCTGGGAAACCACTGGAGGCAGCTTTCATGCAGTTCTCCTAACTGTGTTCACATATTTAAGGGCTGTTTCAGTAGTTTTGCATGTTTAGTCCAGAACAGCATCACAAGGGGACACCGTACCATCAAGCCACTGTTGTGGGAACCAAGAAGCATACAACTTTAAAAGGCCAGTCGTTATTAGAGTAGTTTGTTGATAAGTGCGATTTTGTGGATGGAACAGGAAAGTTCTCAGCCCATGTAGGCATATTTCCAGTCTCTGAGTGGAACGTAGGTCTCCTTTACAACCTGCGGTGAGGTCCATCTGAGGACATAGTGTGGGCCGCCGGGCTTGTCGTTGGTA

Function

GO: NA

KEGG:

id description
ko04972 Pancreatic secretion

RNA

RNA id representative length rna type GC content exon number start site end site
TU366466 True 952 lncRNA 0.38 2 17172262 17184538

Neighbor

gene id symbol gene type direction distance location
her15.2 LOC108254744,LOC108254745,LOC108431592,LOC108431591 coding upstream 2258 17169010 ~ 17170004 (+)
LOC113537832 LOC108254739,LOC108254738,LOC108254741,LOC108431617,LOC108254742,LOC108254740 coding upstream 7654 17163772 ~ 17164608 (+)
LOC113538038 LOC108254738,LOC108254739,LOC108254741,LOC108254740 coding upstream 37148 17133887 ~ 17135114 (+)
LOC113537879 NA coding upstream 57101 17111543 ~ 17115161 (+)
LOC113538050 LOC108254737,LOC108281062 coding upstream 64346 17105866 ~ 17107916 (+)
lrrc38b lrrc38,LOC108281009,LOC108439497,LOC107691331,LOC107685631,LOC107568719,LOC107555684 coding downstream 113182 17297720 ~ 17318657 (+)
aadacl4 aadacl4 coding downstream 192421 17376959 ~ 17380928 (+)
c20h1orf158 c21h1orf158 coding downstream 196461 17380999 ~ 17387719 (+)
LOC113537884 NA coding downstream 841103 18025641 ~ 18028630 (+)
rnf207a LOC108255220 coding downstream 845655 18030193 ~ 18034462 (+)
G309208 NA non-coding upstream 156018 17015636 ~ 17016244 (+)
G309184 NA non-coding upstream 172238 16903181 ~ 17000024 (+)
G309201 NA non-coding upstream 202825 16968396 ~ 16969437 (+)
G309194 NA non-coding upstream 253107 16917999 ~ 16919155 (+)
G309187 NA non-coding upstream 268005 16903857 ~ 16904257 (+)
G309461 inpp1 non-coding downstream 60162 17244700 ~ 17248075 (+)
LOC117599872 NA non-coding downstream 91902 17276440 ~ 17277832 (+)
G309525 NA non-coding downstream 199250 17383788 ~ 17384010 (+)
G309933 rpl22,LOC100304536,LOC103047485,LOC106566811,LOC108414460 non-coding downstream 734998 17919536 ~ 18018096 (+)
G309970 NA non-coding downstream 779886 17964424 ~ 18058167 (+)
amigo3 amigo3 other upstream 670578 16489361 ~ 16501684 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other upstream 1372372 15756890 ~ 15799890 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other upstream 2647286 14514592 ~ 14524976 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other upstream 2695445 14179783 ~ 14476817 (+)
ippk ippk,LOC107755999,LOC106566243 other upstream 3479350 13674354 ~ 13692912 (+)
LOC113537865 LOC108280979 other downstream 76441 17260979 ~ 17263663 (+)
snrpe snrpe other downstream 1502859 18687397 ~ 18692014 (+)
G310681 LOC108254836 other downstream 1902487 19087025 ~ 19087806 (+)
svbp NA other downstream 2310220 19494758 ~ 19498671 (+)
phf13 phf13 other downstream 2323651 19508189 ~ 19517178 (+)

Expression


Co-expression Network