G310007


Basic Information

Item Value
gene id G310007
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 18040882 ~ 18043514 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU367176
ATGGAGGTAGacacaaaaacatatacatTTCATAGTAACACTTAGGCATAACCAGGTCTCTTCTTACACAAGTGACACCAATATAATTAAAGTTTTTAGAGCTTCTAAGAGAAGCTGCCAACttcagaattactggcaccctttaTGATATGAGCAAAAATGCATAAGCATAAGCATATTAATACTGGGTAAGACACTTTTATGCAATCCCAAAAATACTGATGGTGTTCAGGGCCaataattattatatgtaaTTACTGTACACTCTCTTGAATAATTAAGTGCCAATAATTATGTGGTCACCTAGAATTTGGCTGATGAATGACACTCTTAGGTAAATTAAGAGATAGCTAATTCTCAGATACCAGACTGCAAATAGATTTTTAATCCAAAAACTGCCAATTTTGCATCACACCAGCCTGCAATCAGGTGGTGGAAACTCCACAGTGTGCACATGACCTCTGAAAGCACTgcactgaaacagaaaaagaagtgACCAATCGCGGATGTCACGCACGGCTGGCTGCATGGCAGGCGCCGTATAATGTGGAAATTGTCTTGTTCAGTGCAACTGTTCTGTCCTCATAACCTGAATTTGACCTTGAGAAAAATATCAGAACCTCGGTTACAGATTACAACCTTAGGacagattaaagattaaaagacAGAATAATTTACTCCATATCACTGTGACATTACAAAATGGGGAACCGACCCATGAGATTGCACTTGACTAATGAACAGGAAGTGGATTGTCACAAGAGGAAACTTGTTACTAAAgagttactaaataatatgaAGCCTTTGACCAGTAATAGTAGTGTACAACACATAAGGAAAGTGAtgctatcattattattattatccagcATCTTCTTTCAACAACAAAACTTTGGAACAATCTCAGTCcaaaagaatgaaaaagcaGCAGGGATGCaaaagtacatatatatatatatatatatatatatatatctTACTCAAATAACAGTACTTTTAATACGAAACTTTTCTACACTTTTTGCATTATGAAGGGTAACATGACAATTAGGGGTggggctaattttttttttttcagatgtaacAAAATTCAACCACATTGCCCTCAATTGTTCAAATTTCTAACAATATCAAAAAGATTTGTAACAAGAACTTGGAAGGTATAAATAAAGGATAACAAATGTAGATATAAGgattaaaatgtagaaataattTTCTTAGATGTAATACAAatcctctattttttttttcaatcccaTCTATAATCCATCTTTCCAGCTATACAATGGGCTACTTGCACAAACACTTTATATCGCATTATAACCAAGACAGCACTTTTGCTTCCAGCTCGTCCACTATAATGGCAACGGTGCTATTTTACACCCGGTGTCTGAAAATGAATATCAGTGACATTCATCATACATGTAAAAACTCTTGCAAAGCTTCTTTTAGTAAGCTGGAGAAAGGCTACTACTATGGAGGTAAGAAAATACCTATTAATAGAACCCAACCCCCAAGCTAACGTTAGCCCAACGCTATGATCTTACTGTaagactgaaagaaaaaagaaaaaaaacaaaaaaaaacaaacaaagttaGATGTTGCTGTCTCGCTGTACTGCCAAATGTACACAGTGCTACGGAAATACGTCATGGCCCTGAGTGCAAGTAGCCCATTACAATCTGCCTACACAattacatttgatttaaaaaaaaaaaaacatatgataCTGTGTGGTTATCATACCATGACTTCTGCATTCCACATTCATACACAAACCTTACTGTTCCAACATacttatagatatatatttgcatttagGCTACAGATGCTCGTCTGCATTCAGTTATATAAGGAAGAACGACTGGTAGAGACATGTACCTATAAGTATGTACATTCCTATAATTctcatatacattttttctttcgTTAAGCACCTTACAACAATACAGTATCAAAAACCTATAAGGATGTACATGATGGAAAATGGGTACAGCAtggctgtgaagaaaaaaattaacctgCCACCCATTGCCACATTTAGCCATGAACCTAAATTGCTTGTAACAGATAACATTCAACTTCACTGCTCCACAAACTGCAATTAATCCAACACACACTCCCAGAAAAAAGGACTAAACTGTACTATTGCTTGTCAAGGGGGTGGGATGTGCAAAAGTACATCCATTATACATGTAacgtaaatatatttcaccttGGAAAACTCATTTAAGGTCCAAATAAGGTCCTTGAGGTCTAATGATGaatcttaaatcattttaaaagcaaCTGCATTCACTTTCCCAggcaaaacatacaaaataaaggTACCGATTACTGACCCCTGAGGGTCTCCCAGCAGTAACAAGCAATGCTACACTTTAGTAACTTTTCAGTATCTTCTTTTCCAGCAGTGTAGTGACCATTTAAAAAAACGGATAATGAGTTAAGGCATAAATCAGTAAGCTCGCACGCCATGTTTCTGGTCCTCTCCTTGGATAAATGGCTTGGCCGCGTTGCCAGATTGGTCCTGATGGTCGATGGACTGATAGTTGTCTCGGTTCCGGGTCACTGTCGGAAAA
>TU367179
ATGGAGGTAGacacaaaaacatatacatTTCATAGTAACACTTAGGCATAACCAGGTCTCTTCTTACACAAGTGACACCAATATAATTAAAGTTTTTAGAGCTTCTAAGAGAAGCTGCCAACttcagaattactggcaccctttaTGATATGAGCAAAAATGCATAAGCATAAGCATATTAATACTGGGTAAGACACTTTTATGCAATCCCAAAAATACTGATGGTGTTCAGGGCCaataattattatatgtaaTTACTGTACACTCTCTTGAATAATTAAGTGCCAATAATTATGTGGTCACCTAGAATTTGGCTGATGAATGACACTCTTAGGTAAATTAAGAGATAGCTAATTCTCAGATACCAGACTGCAAATAGATTTTTAATCCAAAAACTGCCAATTTTGCATCACACCAGCCTGCAATCAGGTGGTGGAAACTCCACAGTGTGCACATGACCTCTGAAAGCACTgcactgaaacagaaaaagaagtgACCAATCGCGGATGTCACGCACGGCTGGCTGCATGGCAGGCGCCGTATAATGTGGAAATTGTCTTGTTCAGTGCAACTGTTCTGTCCTCATAACCTGAATTTGACCTTGAGAAAAATATCAGAACCTCGGTTACAGATTACAACCTTAGGacagattaaagattaaaagacAGAATAATTTACTCCATATCACTGTGACATTACAAAATGGGGAACCGACCCATGAGATTGCACTTGACTAATGAACAGGAAGTGGATTGTCACAAGAGGAAACTTGTTACTAAAgagttactaaataatatgaAGCCTTTGACCAGTAATAGTAGTGTACAACACATAAGGAAAGTGAtgctatcattattattattatccagcATCTTCTTTCAACAACAAAACTTTGGAACAATCTCAGTCcaaaagaatgaaaaagcaGCAGGGATGCaaaagtacatatatatatatatatatatatatatatatatctTACTCAAATAACAGTACTTTTAATACGAAACTTTTCTACACTTTTTGCATTATGAAGGGTAACATGACAATTAGGGGTggggctaattttttttttttcagatgtaacAAAATTCAACCACATTGCCCTCAATTGTTCAAATTTCTAACAATATCAAAAAGATTTGTAACAAGAACTTGGAAGGTATAAATAAAGGATAACAAATGTAGATATAAGgattaaaatgtagaaataattTTCTTAGATGTAATACAAatcctctattttttttttcaatcccaTCTATAATCCATCTTTCCAGCTATACAATGGGCTACTTGCACAAACACTTTATATCGCATTATAACCAAGACAGCACTTTTGCTTCCAGCTCGTCCACTATAATGGCAACGGTGCTATTTTACACCCGGTGTCTGAAAATGAATATCAGTGACATTCATCATACATGTAAAAACTCTTGCAAAGCTTCTTTTAGTAAGCTGGAGAAAGGCTACTACTATGGAGGTAAGAAAATACCTATTAATAGAACCCAACCCCCAAGCTAACGTTAGCCCAACGCTATGATCTTACTGTaagactgaaagaaaaaagaaaaaaaacaaaaaaaaacaaacaaagttaGATGTTGCTGTCTCGCTGTACTGCCAAATGTACACAGTGCTACGGAAATACGTCATGGCCCTGAGTGCAAGTAGCCCATTACAATCTGCCTACACAattacatttgatttaaaaaaaaaaaaacatatgataCTGTGTGGTTATCATACCATGACTTCTGCATTCCACATTCATACACAAACCTTACTGTTCCAACATacttatagatatatatttgcatttagGCTACAGATGCTCGTCTGCATTCAGTTATATAAGGAAGAACGACTGGTAGAGACATGTACCTATAAGTATGTACATTCCTATAATTctcatatacattttttctttcgTTAAGCACCTTACAACAATACAGTATCAAAAACCTATAAGGATGTACATGATGGAAAATGGGTACAGCAtggctgtgaagaaaaaaattaacctgCCACCCATTGCCACATTTAGCCATGAACCTAAATTGCTTGTAACAGATAACATTCAACTTCACTGCTCCACAAACTGCAATTAATCCAACACACACTCCCAGAAAAAAGGACTAAACTGTACTATTGCTTGTCAAGGGGGTGGGATGTGCAAAAGTACATCCATTATACATGTAacgtaaatatatttcaccttGGAAAACTCATTTAAGGTCCAAATAAGGTCCTTGAGGTCTAATGATGaatcttaaatcattttaaaagcaaCTGCATTCACTTTCCCAggcaaaacatacaaaataaaggTACCGATTACTGACCCCTGAGGGTCTCCCAGCAGTAACAAGCAATGCTACACTTTAGTAACTTTTCAGTATCTTCTTTTCCAGCAGTGTAGTGACCATTTAAAAAAACGGATAATGAGTTAAGGCATAAATCAGTAAGCTCGCACGCCATGTTTCTGGTCCTCTCCTTGGATAAATGGCTTGGCCGCGTTGCCAGATTGGTCCTGATGGTCGATGGACTGATAGTTGTCTCGGTTCCGGGTCACTGTCGGAAAA

Function

GO:

id name namespace
GO:0008144 drug binding molecular_function
GO:0019825 oxygen binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU367176 False 2583 lncRNA 0.36 2 18040882 18043514
TU367179 True 2585 lncRNA 0.36 2 18040882 18043514

Neighbor

gene id symbol gene type direction distance location
rnf207a LOC108255220 coding upstream 6420 18030193 ~ 18034462 (+)
LOC113537884 NA coding upstream 12252 18025641 ~ 18028630 (+)
c20h1orf158 c21h1orf158 coding upstream 653163 17380999 ~ 17387719 (+)
aadacl4 aadacl4 coding upstream 659954 17376959 ~ 17380928 (+)
lrrc38b lrrc38,LOC108281009,LOC108439497,LOC107691331,LOC107685631,LOC107568719,LOC107555684 coding upstream 722225 17297720 ~ 17318657 (+)
rap1ab rap1b,rap1a,rap1ab,LOC105901888,LOC106566052,LOC107560426,LOC107742898,LOC108413334 coding downstream 59323 18102837 ~ 18118319 (+)
LOC113537957 LOC100304639 coding downstream 346991 18390505 ~ 18398072 (+)
LOC113537956 NA coding downstream 360024 18403538 ~ 18409560 (+)
ghrh ghrh coding downstream 376945 18420459 ~ 18427187 (+)
si:ch73-303b9.1 LOC108254896 coding downstream 410296 18453810 ~ 18454920 (+)
G309933 rpl22,LOC100304536,LOC103047485,LOC106566811,LOC108414460 non-coding upstream 22786 17919536 ~ 18018096 (+)
G309981 chd5,LOC108414967 non-coding upstream 63791 17976615 ~ 17977091 (+)
G309525 NA non-coding upstream 656872 17383788 ~ 17384010 (+)
LOC117599872 NA non-coding upstream 763050 17276440 ~ 17277832 (+)
G309461 inpp1 non-coding upstream 792807 17244700 ~ 17248075 (+)
G310084 NA non-coding downstream 78516 18122030 ~ 18122255 (+)
G310201 NA non-coding downstream 383911 18427425 ~ 18430590 (+)
G310208 mybl2 non-coding downstream 400571 18444085 ~ 18445034 (+)
G310183 LOC105009000,LOC107722005,LOC107551326,LOC107654800,LOC107670934 non-coding downstream 424289 18467803 ~ 18471024 (+)
LOC113538055 NA non-coding downstream 553002 18596516 ~ 18601724 (+)
LOC113537865 LOC108280979 other upstream 777219 17260979 ~ 17263663 (+)
amigo3 amigo3 other upstream 1539198 16489361 ~ 16501684 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other upstream 2240992 15756890 ~ 15799890 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other upstream 3515906 14514592 ~ 14524976 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other upstream 3564065 14179783 ~ 14476817 (+)
snrpe snrpe other downstream 643883 18687397 ~ 18692014 (+)
G310681 LOC108254836 other downstream 1043511 19087025 ~ 19087806 (+)
svbp NA other downstream 1451244 19494758 ~ 19498671 (+)
phf13 phf13 other downstream 1464675 19508189 ~ 19517178 (+)
vamp3 vamp3 other downstream 1725469 19768983 ~ 19783925 (+)

Expression


Co-expression Network