G310446


Basic Information

Item Value
gene id G310446
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 18738966 ~ 18809037 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU367692
ttttttttttttttttttttaattttctgtgctCAGCACAATCCATTCTGCTGGCCCCATTGTAGCATAAAGCATAACATAAAGCAAAGACAGATCTTCCACTTAAAACACACGAGACAAGTGAAGTCCCTAAAATTTAACTCTCAGGGGGGTTAcaagtgagtctgtgtgtgtttgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtatcttcaCAGTGGTGCCAACATTACTAGATCAGAGGCATTCAACTACAAATTGTAAAGGTCCCTTAACATAAAATTTCTGGTTTAAAGGTTCAGATAAGCAGCTAACACGACCGAATGGCAAGATCAGTTACCTTTAAATGCTTAGCCATAAATGATTTGCTTATTTCATAGTGGTACTAACCACTTTTTAAATAGTGCCATGGATGGGGCTGTGGTTAAGAAAGccattgtcaagtccaagaccaggacaaGATGAGGTCGAGTCAAGACAGAATCTTaatgaaagtgagacagagtcAAGATTGAGACAGAAAACCATCAAGGCCAAACCTTTACTTCAGTTAGCTGGCTTCATTAATGCATTGCGCCAGTGATTAGGCTGTTTTCTAAAAGaggcattactctctctcccctgtcacactagccaatcatgggcgcctgtgagctcatgtattcGCTTATTTCATAGTATTGTTTCATAACAGTGCTTCAcgtaaacactttttaaatagTGCCATGGATGGGGCTGTGGTTAAGAAAGAAactgtcaagtccaagaccaggactggATGAGATCAAGTCACTGAGTGTCACGCCGCCCtctgacgcagcatgagcagcagtttgaaaagatgtagtgtctcaaaggaagcacatgttagtcTTCACCCTCCTTGATCAGTAGCTGTAGTATGATAGGCAAGAGCTgtctgatgggtgggaattggctaTTTGggacaaaatggagaaaaatcttTACATATGTATGCGAAAAGAAagcacaaacattatttttatagtcTCTTGTTTGAGACCAAGATCATATTTGGCTAGAACAATGTCCAAGACCGAAGTGTGTCCAAGTACAAATAAATGCCAATAAGCCTAATAAGTCCAAGTCTACacagaaaacatttcaaaaccAGACACAAGTCATAAAGCCCTAGCTACAGACTCTGGACACATAAGATGCACATCTAAGCCTATTTTGAATTAGTAGCCGAGAACAGACGCATACTTTTGTCAGTCCCGTAATCAGATCAggtacaaaaaaagaaaaatctgtgaaagtctgtgaaactaCAGACTGCAGCCATCATACCTGGatcagctctgctacagtattttttgagTGCTTATTTTGGTCTGTTGAATTATTCTGTTGGATCAGTTGATCTAGCGTATCATAACTTAAATGATTAACAGCCCATTGTATGCTGTGCTTTTACCGACCGGAGACCACAGCCCCGCCCACTTGTTTTATACTGTTCACAAAGCCTACAGAAAGGTTTGCGAATTCACTGATGAAAATTCACCAAGTTAAAGTTGGCACAAGGGGAAAGAAACCACAACCAGAAGCAAATGAGGATCTTTCACatcctgtgtcctttccccttcggtgatttctttttggctgaaaaaacagaaaagcttctttttttaagagTCTTCCATATTGCCCGAGCAAGGgatcaaaaatcataaattctATGGCTAAATCGTAAATGATGGCACCTCTGTGTACATGTATTAACTAGTGATTAAAAGAAGTTAAAGGGCTCCTTGTTCTAAAGCCTAGTACCGAAGATTATCTGCTCTTATAGGACAAACCATTAGCAAGTTCAAGTTTTCATAGGGTGGTATtcacataataaaaaaacaaaacaaaacaaaacaaaaaacccattATACCCTTATAATCTTCATTCAGGTCTTCTAGTCATGAATGCATCAATGACTTTAAGTCAAATGTGGGCACGAACCCTTTTGGCTCATCTCTGAGAAGGccagcatttctttttctgaaaTCCCATCCCATCCCTTCATGCAGCGGATCTGCATTACAAAGTAGCCCTTTTAAGCTTTGTAGCACGGTTATTAAGAAGACAGTTTAATAGAAAATGTTACATGCTCGCAAAGAATCCGAAAAAACAAAGCACAGCGATACTTGACCTGCTCACTTTCCTGTGACTCTGCCTGAAAGTGAAGTGGATAGCCATAAGTGGTGCATTTATTTCTCTAATCGTACAGTACAGGAGCTTTTATTACCAGCAGTCTTGCATCATTTTAATCCTATTTCATAATTCATGGTGGAGGTGATGGCACAGGCGTGTACGCTGTGGTATATCTGAACTCGAtctgatattaaattaaactgcTGCTCACGCAGCTAGGTGTGTAAAAGACTTCTTGCCTTGTGTTTTGCCGATAGAGAAAACAACTAAATTGTGGCAGTGCACAATTGCTTAAcagatttcaaatgaaaaacaataacgTGAAGTTTACCATTTCTGTCTTAGTAGAAAAAAACTGCTTGGAACCTGAAAGCTGATTTGTTCCATCGTCTGTGAGCTAAGAGCGCTTGCTTGTCGCTCAGAGATTTAAAATGTTCCAGTTTTCCAACTTTTCAAAGATTAATGAGGAACTTAAGAGGTAATCAAAGCATACTCAAGGTCACTTTGCTGTGGTCTGGAAACTTCCACTAATTGCTTCATTTATATCACTTACACATAGAGCACTTGGTGTCTGAGCATCCTAATTCTCATGAAAACTTCAAGTTTAAGTCGACCTTTCCTTTTAAACCCCACCACGTTGCTGCCAACACCTCTGAGCATAAAAAGGGGCTGAACATCCCCATTGAAAAATAATGAGGATTCCTGTTCTCCCACGAGAAGATAAGCCATAATGTAATAATCATTACATACCACTACTACAGCAATAGTATTAcgagttattattataatcatagtGGCTATTGTAGCCATAATATCACAGATCTCATTGtggtgattcttttttttttttgataaataaagGCTCGTGAGGTTTCCGCGGGTGTTCAGCAGAGCTGTTCAGTCTCCCACGTCTGTGTCCCTATCGCCGATCAACCACAGCATATGGAAGCAAAGAGCCAGGAAGCCTGTGCCTAGCAAGTCGCCAAGGGCCGTTAGGTAGGGAATGGAAAAGTTATCGGGATCCATCCCTCTCTTCCACATCCACTGCACCATCCAGTCAGCCAGATACAGCAGGATCATCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU367692 True 3246 lncRNA 0.40 2 18738966 18809037

Neighbor

gene id symbol gene type direction distance location
kif17 kif17,LOC108438632 coding upstream 68507 18654169 ~ 18670459 (+)
sh2d5 sh2d5 coding upstream 84927 18646711 ~ 18654039 (+)
hp1bp3 hp1bp3 coding upstream 93448 18637593 ~ 18645518 (+)
pdrg1 pdrg1,LOC107550337,LOC107580937 coding upstream 174155 18560022 ~ 18564811 (+)
si:ch211-266k22.6 LOC108255298 coding upstream 180285 18553402 ~ 18558681 (+)
cdk18 cdk18,si:dkey-166c18.1,LOC108254840,LOC107654374,LOC107756627,LOC107698687 coding downstream 163925 18972962 ~ 19037668 (+)
mfsd4aa LOC108254837 coding downstream 233545 19042582 ~ 19059543 (+)
c20h1orf50 c21h1orf50,cunh1orf50,zgc:112255,LOC105895900,LOC107654415,LOC107654365,LOC107565729 coding downstream 528895 19337932 ~ 19343063 (+)
cdc42 cdc42,LOC103465423,LOC100691174,LOC101164400,LOC108248645,LOC107083933,LOC103386293,LOC100697482,LOC107395067 coding downstream 540711 19349748 ~ 19363983 (+)
LOC113538092 camta1 coding downstream 726374 19535411 ~ 19762252 (+)
G310425 NA non-coding upstream 107022 18631715 ~ 18631944 (+)
G310421 NA non-coding upstream 121965 18616690 ~ 18617001 (+)
G310420 NA non-coding upstream 123312 18613515 ~ 18615654 (+)
G310416 NA non-coding upstream 136386 18602378 ~ 18602580 (+)
LOC113538055 NA non-coding upstream 137242 18596516 ~ 18601724 (+)
G310547 NA non-coding downstream 91223 18900260 ~ 18906623 (+)
LOC117599928 NA non-coding downstream 105257 18914294 ~ 18964490 (+)
G310649 NA non-coding downstream 251298 19060335 ~ 19066486 (+)
G310679 NA non-coding downstream 272497 19081534 ~ 19082121 (+)
G310680 NA non-coding downstream 273332 19082369 ~ 19085507 (+)
snrpe snrpe other upstream 46952 18687397 ~ 18692014 (+)
LOC113537865 LOC108280979 other upstream 1475303 17260979 ~ 17263663 (+)
amigo3 amigo3 other upstream 2237282 16489361 ~ 16501684 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other upstream 2939076 15756890 ~ 15799890 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other upstream 4213990 14514592 ~ 14524976 (+)
G310681 LOC108254836 other downstream 277988 19087025 ~ 19087806 (+)
svbp NA other downstream 685721 19494758 ~ 19498671 (+)
phf13 phf13 other downstream 699152 19508189 ~ 19517178 (+)
vamp3 vamp3 other downstream 959946 19768983 ~ 19783925 (+)
si:dkey-264d12.5 LOC108254816 other downstream 1039430 19848467 ~ 19868481 (+)

Expression


Co-expression Network