G310649


Basic Information

Item Value
gene id G310649
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 19060335 ~ 19066486 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU367933
CAAACACTGacagcatttaaaaatcaagcatttattttaaacagagtGAGTGTAATAAGATTAGATCTTCTAGCAGACAATAGCGTTTTAATACAAGCTTGCTTTTGCATGCAGAAAGTCATAAAATGCACATCCCACTAGCTTCCTGGAAAAGCTTCCTCGTATTGTGCTGTGTAGCTGCGGGCGTGCTGGGCCAAGtccatgacctttgaccctgaaGAAGCAGTTGTAGCTCCTTGCACTGCCAGCGTATTATTAATATCCACTGTACTGCATTAAATAGCTGCTTATTTACATCTGTTTGGGCTTCCCAGGTGTCTAAGTTAACACAACAAACCTCAGACACGGCTGactgattttgttttctttaatatttgtcCTTTTATTCAACATCCACAATAGCTATTAAGCCGAATCGACAGTTGTAAACATTTACGCTGGTTGTCACAGATTGAAAAGACAATGGGACAAAACGTTAGCATTTGCACATTAGAATTTCTTACAGGCTGAACAACATTTACATGATATGTTTAGGACTGGTCACTTATCAAGGCAgtgttggaggaaaaaaaactttttttcactAAATTTTAACTTGTGCATCTTAGAGAAAGCATGATTGTGTGattgagttgacttttttttcccccgtccAAATTCTCAGAAAATTAAATgcttaagaaaaaataaattcatttataactTGAAGATGAATGGGCCACAAAATGAGTATAATTTTGGAAAAAGTAGTAAATATAAAGATTTCTTTAGCTGTGCAGTCAAAGATGTACGTGCATAGATTCATCTTTTGTAGTAGGGAAACTGGAGGTATGcagtttttctattttaatctGAACAGAATTGTTTAACatgatatatttaaatttaagtgcCCCAGAGAAAGTTAACACTGAAAAGttatacacaaaaatatattacagaagTATGGGAATGctacaaatttaaaataaaaaaaaaaaaagacccgaTTTTAgaaaagaatgtgcaggactaTCTAATCACTTAAAAGATACAgataatatttacacacaagcaGACAAACATAGAAAAGCTATACATAAAATgtcagcttcatttttttttttttttggcaaaatattTCAATTAACGTACTTTAATAGCTGTATAATAAACACGAAAGAacatagagggaaaaaaaactcccaGTAATATCCAATTTCATATCGCACACTAaatagatcagtgtgtgtgtgtgtgtgtgcaaaaataCACACCGTAATGAGGGGTGAAGCCTTTTAGGAATGCTCAAGTCTAATAATTAGATCTGGATTTAAACATTTGAAGCATACGGAGGAAATCAGAGGTTGCAGCTATTAAAGAAAACTCTCATTACACAGTATATCCACTTTCACTTGGTTGCTgctacttgaaaaaaaaaaaaaaaaacccttgaaaAAGCCACAAAAACTTACCCAAAATAATCAGCATGAAAAGCATCATTTCTAAGCATCATCTCTATCTCTAACTCTAACTTTCAGGTCCCTATGATCCTAAAATTCGTGTATGTTTGTAAAACACTCACAAATCACACGTTGAACCACATTAGCTTAAGTAGTTAGCGTATGTTACAGCTAGGTTCCTACTAGTTCTGTTTCATGTCCAAGTTTGTAAAGTCTGTAGCTCTGTAAAGCACCGACGGCCAGAAAACTGACCACTGAGAAAcgaaggggaaaaaaacgtgCACTCGTCACGTATGGCAgcgaaaaaaaacaaattcactAAGTCACCTTTTTCATACTTTTCACTTTTTAGCTTTTAagatattgtatttatatacaaaGCCCTTTAAAAGGTTTGGGGACACCTGGTTTTTGTTTGATAGATTTTCAATTGACGAGCATTTCCTTTGTTGGTTTACaacaaaattaacatttaaccttgttatttttttttttatatatttttataattgttaCAATTACTaaataacaaacattaaaataaaaaatatttagcagcTATAATTTGCATGCCATTTATttacctagaaaaaaaaataaattaagctacttatttaaaaaaaaaaaaaaaatctttacctTTCAATTGCGATGTATATTGTAGCTAAAACAATTctaaaactggaaaaaaaattgagtcacttgtttattttgcctctttttatccatcctttttgttttaattattattattttaatctcaCTGGCTTGGCTGTGTATTCATAATGCCCATGTTCTCGAACTATGCTTCGTTATAAAGTTAACCGCTGCACTTCGAGCTCCAGACATACTGCATAAGTGCTTGGTATTTGAAAGTATTTAACATACCTGAGACTCGGTCTGAGATGCTAAATAATTTCCATttcatattaatctttttttttttccttttcctgtcaCACATTTGACACTGAGCTTTAGGTTGATTTGCTCTTCAAGTGCTTTCGCTGCACGTGTGCACTGAGAGAATAACGACGTCAGGCGCCGTCACGCTGCGTGTGGCCGTGAATCCAGTTCTGCGTTTGAGTCATGGCTTGACGAGATCCTAATTACACACAATCATAGAGGCTGAAGACGAAGTTCCACCTGAAACCCGTAATGAAGGTCCTAAACACTCGTCATCTTCGGCAGCAGGAGGGAGAATTTGGTCAACGGGTAACACACGAGAGCGGTCCTGGTGTGTTGGTGCCATCCAGACTGTGTACCGGCACCGAGAACTGGGTGGAGCTCAGGACAGACGGAAACTGCGGAGAGAAGAGGCAAAGAATATAAAGGAAATGCCAGTCAAAACTGGCAACTTCAGGCTAAGTGAGAAGGTGGTTAAAGGAAGTAGtaataaaaaggaaagaaaaacatttaaatgtattcagtTTCTCCTGTGAACTGATCTGGCAAGACACAAAGTTaaagtagaagaagaagcagcaaaGTCAGTCACTAAAAATCTTTTGTGTTTCATATACGGCATACATCCACCCCACCCTCCACAAAacgttttaacattttaaatttggtcataatggaaaaaaaaaaaaacctaacttGTGTACTTACTTGCACACTTGGATACATATTTACAAACTTgcatacttatttacttacatacATAGTTGTGTACTTCCATACTTGCATACCTATTTATACACTCACTATCCACTTTTATCATGAacacttgctcatttatgccgttatctaatcagccaatcatgtggcagcagcacaatgcataatatcatgcagatacaggtcaagagcttcagttaatgttcacctcaaacatcagaatgaagtaaaagtgtgatctctgtgacttcagccatgccagatgagctggtttgcaTATTTCAGATACTATCCTgggatttttcacacacaactgtctctAGAGTCTACACAGAATGGTGTGAAAAGCATAAACCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU367933 True 3422 lncRNA 0.35 4 19060335 19066486

Neighbor

gene id symbol gene type direction distance location
mfsd4aa LOC108254837 coding upstream 792 19042582 ~ 19059543 (+)
cdk18 cdk18,si:dkey-166c18.1,LOC108254840,LOC107654374,LOC107756627,LOC107698687 coding upstream 22667 18972962 ~ 19037668 (+)
si:ch211-112f3.4 LOC108254938 coding upstream 256433 18790926 ~ 18803902 (+)
LOC113537968 sox13 coding upstream 318778 18708742 ~ 18741557 (+)
kif17 kif17,LOC108438632 coding upstream 389876 18654169 ~ 18670459 (+)
c20h1orf50 c21h1orf50,cunh1orf50,zgc:112255,LOC105895900,LOC107654415,LOC107654365,LOC107565729 coding downstream 271446 19337932 ~ 19343063 (+)
cdc42 cdc42,LOC103465423,LOC100691174,LOC101164400,LOC108248645,LOC107083933,LOC103386293,LOC100697482,LOC107395067 coding downstream 283262 19349748 ~ 19363983 (+)
LOC113538092 camta1 coding downstream 468925 19535411 ~ 19762252 (+)
per3 per3 coding downstream 721335 19787821 ~ 19809321 (+)
si:dkey-264d12.1 LOC108254813 coding downstream 749420 19815906 ~ 19834429 (+)
LOC117599928 NA non-coding upstream 95845 18914294 ~ 18964490 (+)
G310547 NA non-coding upstream 153712 18900260 ~ 18906623 (+)
G310446 NA non-coding upstream 251298 18738966 ~ 18809037 (+)
G310425 NA non-coding upstream 428391 18631715 ~ 18631944 (+)
G310421 NA non-coding upstream 443334 18616690 ~ 18617001 (+)
G310679 NA non-coding downstream 15048 19081534 ~ 19082121 (+)
G310680 NA non-coding downstream 15883 19082369 ~ 19085507 (+)
G310686 NA non-coding downstream 23896 19090382 ~ 19122056 (+)
G310703 NA non-coding downstream 43643 19110129 ~ 19113027 (+)
G310828 NA non-coding downstream 494697 19561183 ~ 19561390 (+)
snrpe snrpe other upstream 368321 18687397 ~ 18692014 (+)
LOC113537865 LOC108280979 other upstream 1796672 17260979 ~ 17263663 (+)
amigo3 amigo3 other upstream 2558651 16489361 ~ 16501684 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other upstream 3260445 15756890 ~ 15799890 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other upstream 4535359 14514592 ~ 14524976 (+)
G310681 LOC108254836 other downstream 20539 19087025 ~ 19087806 (+)
svbp NA other downstream 428272 19494758 ~ 19498671 (+)
phf13 phf13 other downstream 441703 19508189 ~ 19517178 (+)
vamp3 vamp3 other downstream 702497 19768983 ~ 19783925 (+)
si:dkey-264d12.5 LOC108254816 other downstream 781981 19848467 ~ 19868481 (+)

Expression


Co-expression Network