G310686


Basic Information

Item Value
gene id G310686
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 19090382 ~ 19122056 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU367980
gcTGAATATCTAAAGCTCTGAAATCTGTTCCAGTTTGCCACATTTTTGTCCCATGAACGCATAAATAAATACGTTGTTTAATAATTTGACTTAATGTTACCTCAGACGTAAAAGTAGTCTGAAGCTTGTGATATTCTATAGATAGCAGCAGCACGAAACTTCCTACACAAACCTTCTCACAAAgtgttaaaataacaaaaatagtcCTACAACTAGcaacaaaatgtgaaatctgtaaatgtgtaaataatttttacagattttacacacacacacacacacacacacacacacacactctgccaaCTGTAATATTATGTACTATTTCGTGTACATCCTTTTTAAGTCCATGTTTTTTCTGGTTGTAACTACAAAAGGCGGAAAgcttcaagggggtgaatacttacgcaatgCACTGTATAAACATGTTGTAATATAACAGAGTAAACAGACTAAAGTCTATTGCTTATGCTTCAGCCTTACTAATATACTTACAGAATCCGGCCTCTGAGGTGAAATTATAATAAGTGTGATAATAAAGGAGTAggcagttaaaataaaatgaatataatgacAGTGAGATGCATAGTTTCATCCAAATTCATCATGAGTAAgcaaaatatacacataaactcattttaaaaagaattagtTCAGCAAATTACCGAATTTTCATACACACCCCAAATGTAGTCAGTTAAGTATTTAATATTTGCACATTCTTTATCTTTGAAAGTTTACTGGTGTGTTAACTTGTAAATTCTTGATTTTGAAAAGAGAAGGATGttgaacactgttgctaggcaactggggaACATGGATACCAAGCACAAGGCTATTACTTCGCTACGTAGTTTGTAGAAGTATCTCCTGCAGACAGCATAAAGACAGCATGacagtataaataaatgacacaaaccTGTGAGGAATCTCAACCTTTCCCTCAGATATGTTGGTAAATTTCCAAGAAAAAGGTCTACGTGTGCATTATCACAGTAATTACAATTAGCATAGAGTGCTAATCCAATTTCAGTAGGCTCTGCCATTTTGGGAAACATCAAACTCGTGAATTCAGTGctgtgagaattttttttattatttcaaacgTCATGAGTACCACAAGTCTAACATCTGGATGCTTATGTTGGGGactgaattattaaaatattaagcagattatttaatatttcacaggaGCAATGGAGcttttttaattcctgaacATTCCACCAACATTAGATCTAAGTTAACATTACTTATAGGTTCACTTGTTGGAGCTATTCAGGTATgaattaaacccattcagttcaagtgactagtcaaaaaaaaaaaaaaaaacttcaataaTAACTTTGATATGGTTAACAAAGCTTAAACATCAAACTTCATTTCAGTTCTTAACTCCACATACTATAAAGTGGCAAAATCCAGAATTCTAAAGAGCAGAAATCCCAGAACAAAATCTCTTCAATACGTCTTCCAGTCTCAACATATACAGtctcaaaaatatataaaatatatagaatatattttCCAGTCTcaaaaatatatagaaacaATCACCTCTACAAATACTCACTGACTGAGTCCAGGAGTCAGCATGGCACAAAGgccaaataaatatacattcaaATAAGTTatgaaagtaaattaataaGTGTCTGTGAATGAAATGAACTCAAACTATTAATGCATCAATAATACTACGTTCATTGTCTACATACACGCCAAACATGGAGCTGGAATTTCAGCGACAAGTGgcatttaaattgaaattttcTCAATTCTTTGCGAACAAGGTATGACACAGAAAAGAGACAAATCCAAATAActggcttgaatgattccttggaccaatccttttcttcagttccccacttcCTACATTAGATCCTACACTTGGAAGGAAGTCGCAGAGATCGGTGGTGTCTCTAGTGAGTGAACACAGCTAGTACAGTTAACTTGCTTGGTTAATCTGCCAGTGAATCCtgtaacatgtaacatgtaatTCAAAAGCAACCAGTTTTCACACAGATTAGTGCATCAGTTCATTTCTGTTTAACTGGTTAGCCTATACAGCCACTACTCTTTCTCATCCAAACTAAAAAATGCCCACAACAGACATCAATAGCAGTCACTACATGACCACAAGAGACCACAAAATTGCTACAATCTTTTGGCTAACTAGCCTGATGCATTCCAACAATAAGCAGTAGCATCTATGTAAAAGCCATCCTTCATCATGGTGATGAAACCAGATGTACTGAAACAGATGTGTAACAAGCTTGAatttatactattttttttttttttttttttttttaaaaaagggagaaaataaaaaataggttCACCAACTGACAGAGTAACGTCGCataaaaaacaccaccaccccCTTTTTCCCCGAATcgcaaaagtaaataaaacggGTGGAAAGCTCTGCTGCGCTGAAGGcttttactttaatattttaccttcagctacacaaaatggtgaataaaacaaactgaaacTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU367980 True 2516 lncRNA 0.34 2 19090382 19122056

Neighbor

gene id symbol gene type direction distance location
mfsd4aa LOC108254837 coding upstream 30839 19042582 ~ 19059543 (+)
cdk18 cdk18,si:dkey-166c18.1,LOC108254840,LOC107654374,LOC107756627,LOC107698687 coding upstream 52714 18972962 ~ 19037668 (+)
si:ch211-112f3.4 LOC108254938 coding upstream 286480 18790926 ~ 18803902 (+)
LOC113537968 sox13 coding upstream 348825 18708742 ~ 18741557 (+)
kif17 kif17,LOC108438632 coding upstream 419923 18654169 ~ 18670459 (+)
c20h1orf50 c21h1orf50,cunh1orf50,zgc:112255,LOC105895900,LOC107654415,LOC107654365,LOC107565729 coding downstream 215876 19337932 ~ 19343063 (+)
cdc42 cdc42,LOC103465423,LOC100691174,LOC101164400,LOC108248645,LOC107083933,LOC103386293,LOC100697482,LOC107395067 coding downstream 227692 19349748 ~ 19363983 (+)
LOC113538092 camta1 coding downstream 413355 19535411 ~ 19762252 (+)
per3 per3 coding downstream 665765 19787821 ~ 19809321 (+)
si:dkey-264d12.1 LOC108254813 coding downstream 693850 19815906 ~ 19834429 (+)
G310680 NA non-coding upstream 4875 19082369 ~ 19085507 (+)
G310679 NA non-coding upstream 8261 19081534 ~ 19082121 (+)
G310649 NA non-coding upstream 23896 19060335 ~ 19066486 (+)
LOC117599928 NA non-coding upstream 125892 18914294 ~ 18964490 (+)
G310547 NA non-coding upstream 183759 18900260 ~ 18906623 (+)
G310828 NA non-coding downstream 439127 19561183 ~ 19561390 (+)
G310870 NA non-coding downstream 595025 19717081 ~ 19717329 (+)
G310882 NA non-coding downstream 689382 19811438 ~ 19811735 (+)
G310880 NA non-coding downstream 713623 19835679 ~ 19836564 (+)
LOC117599874 NA non-coding downstream 717365 19839421 ~ 19848284 (+)
G310681 LOC108254836 other upstream 2576 19087025 ~ 19087806 (+)
snrpe snrpe other upstream 398368 18687397 ~ 18692014 (+)
LOC113537865 LOC108280979 other upstream 1826719 17260979 ~ 17263663 (+)
amigo3 amigo3 other upstream 2588698 16489361 ~ 16501684 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other upstream 3290492 15756890 ~ 15799890 (+)
svbp NA other downstream 372702 19494758 ~ 19498671 (+)
phf13 phf13 other downstream 386133 19508189 ~ 19517178 (+)
vamp3 vamp3 other downstream 646927 19768983 ~ 19783925 (+)
si:dkey-264d12.5 LOC108254816 other downstream 726411 19848467 ~ 19868481 (+)
errfi1a errfi1 other downstream 997327 20119383 ~ 20177272 (+)

Expression


Co-expression Network