vamp3 (vamp3)


Basic Information

Item Value
gene id vamp3
gene name vamp3
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 19768983 ~ 19783925 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU368156
gttctggtatTTCCCTGAAGTGCACCAGCCCTTTAACCACAGCTCCTGCTTCAGTCGCCTCACACAACTGCTAACACACCgctgtttttcttcatcacttttaCTGCTCCGTGTTTCGGTCTACAGGAATCATGTCTGCTCCCGCTGCAGAAGGTCCCGGCGCTTCAGGCGTGGCAGGAAACAACCGAAGACTGCAGCAGACCCAGGCTCAGGTGGATGAGGTGGTGGACATCATGCGGGTGAATGTGGACAAAGTCCTGGAGCGAGACCAGAAGCTGTCCGAGCTGGACGACCGGGCGGACGCTCTCCAGGCCGGAGCCTCGCAGTTCGAGACCAACGCCGCCAAACTGAAGAGGAAGTACTGGTGGAAGAACTGCAAGATGTGGGCCATTTTGATAGCTGTGCTCATaatcatcgtcgtcatcattATCATTTGGAGTAAATCTTAAAACAGCAAGAAAACGGCAGAATGGCCTGACGGCTGTGATGGGAGAgtggataaatatatataggaagtatcagctgatactaTGAAGACGGAGAGAGCACGTTCTTCCTGACGTAAAGCTGTTCTAGCCTGCTGAGTGTCacattttgtaaaaagaaaaaaatccttaactcttgtttattgtttttttcctttttttattttttgtttttaatagttGTGATTTGAATGTGCAAAGACTTACTCATCTGacgtttgtttttttcctcgcTTATTAAAATTTCACGTGCACTCCATACTTTCACTATTTGTACTTATCACAATGGCCTTAAGCAGTCAGTGGTTCAGAAGAGAGCAAAAAGAGTGCcagtttgtcatgttaaaaCTTTTAGCTCCTTCATGTGCCTCTTAAACTTTTTTAGGTAAAAAGGCGGCACTGAGAACCAGTGGAGCCAGAACGTTGTAAAcaagcctgaaatgaagaaactagtTTTTTACTAGAAACaatgtaaaaattacaaactgcaccttcttgacttcttttttttgatCATCAAGGTCACATGATAGTGTACATCTGTCTAGCTGTTTGTAGCATTGATGTTGAACTATCCTGACcaaaaagttgaacttttttgCTTACCGATCAACAGAGAGCTCCATGTCTCTAAAACATGATATAAAATGGTtggactgtttttttgtttttttttaattagtcgGTGCCTTAACATTTTAGTGCCAGCACAATTTAGAAGTATCCAGTGACTCGAAGGCCTTCGAACAAACACACTTGAGTGCCATTAATCAACACTGCCTGCATGATTCAaatcaaattatatatataattataattataattatatataataagccatataattaaaaattataattacacTTTCTATGTACTTGCACAGTTGTTTTCTTCCAGACCGTTGAGCTACTGCTATTTTATGATCTCACCCAAAATGAtgatgaatttaaataaaattcttgctacactttctctttttttctttctaattttttctttcttcactaaGCAGCAGCAGTCTCCGAGCATTCACGTCATGTTTGATGGCACCAGAACAAGtttgtttatgagtgtgtgattgatttatatatacagtactgtgcaaaagactTGGACCATCTGAGAAGCCGTTTAtctgcagtgtttgtttttaaaacaggatttttgcatttcagaaaaaaaaaaaaaaagagtcagcTGGAAGAACCCGGGGTTTGTTTCCCAAACCATCtaattgtgtgtatttattaaaattccACCAGCAGCACAGCTAATACACTGATTAGCTAAAGCAGGTGTGCTAGCAGGGGTAATTTAGCAAATACGCCAGTGTACCAGGGATAGTTAGAGATACTGGAATGTTTTATCAATGAGGCTGATTCTCTGAAACATGGATCTTGTATGTTTGGGAAAACTCCTGAGCCCAGCTTTAAGCTATAAAGCTCCTAAAGCTCTGATTTAGACCTACTCGGGCTGTTATGTCATAGCTGCGTGGGAACGCCTGGACATGGAAAAGCACTCTTCATGAAGCTCGGAAAAAATTTATAACACTACTTCATGTGTGGGTTCTAATAAAGGCTacgtaaaaacatttaaaaaaaagaaactgaagaaaGTAAATTCTATTATTAGTGTTTCTATTTATATGATGCAAGATATATAGTTTTACATATTTcagtctaagacttttgcacattaCTGCTTTTTGAATGTAAACtattatatttcaaataattctATAAAATGGCCTTCCAACCTGTTGTGCTTTTTGAATTTGCTATTGCTAATAAATATGGAC
>TU368157
gttctggtatTTCCCTGAAGTGCACCAGCCCTTTAACCACAGCTCCTGCTTCAGTCGCCTCACACAACTGCTAACACACCgctgtttttcttcatcacttttaCTGCTCCGTGTTTCGGTCTACAGGAATCATGTCTGCTCCCGCTGCAGAAGGTCCCGGCGCTTCAGGCGTGGCAGGAAACAACCGAAGACTGCAGCAGACCCAGGCTCAGGTGGATGAGGTGGTGGACATCATGCGGGTGAATGTGGACAAAGTCCTGGAGCGAGACCAGAAGCTGTCCGAGCTGGACGACCGGGCGGACGCTCTCCAGGCCGGAGCCTCGCAGTTCGAGACCAACGCCGCCAAACTGAAGAGGAAGTACTGGTGGAAGAACTGCAAGATGTGGGCCATTTTGATAGCTGTGCTCATaatcatcgtcgtcatcattATCATTTGGAGTAAATCTTAAAACAGCAAGAAAACGGCAGAATGGCCTGACGGCTGTGATGGGAGAgtggataaatatatataggaagtatcagctgatactaTGAAGACGGAGAGAGCACGTTCTTCCTGACGTAAAGCTGTTCTAGCCTGCTGAGTGTCacattttgtaaaaagaaaaaaatccttaactcttgtttattgtttttttcctttttttattttttgtttttaatagttGTGATTTGAATGTGCAAAGACTTACTCATCTGacgtttgtttttttcctcgcTTATTAAAATTTCACGTGCACTCCATACTTTCACTATTTGTACTTATCACAATGGCCTTAAGCAGTCAGTGGTTCAGAAGAGAGCAAAAAGAGTGCcagtttgtcatgttaaaaCTTTTAGCTCCTTCATGTGCCTCTTAAACTTTTTTAGGTAAAAAGGCGGCACTGAGAACCAGTGGAGCCAGAACGTTGTAAAcaagcctgaaatgaagaaactagtTTTTTACTAGAAACaatgtaaaaattacaaactgcaccttcttgacttcttttttttgatCATCAAGGTCACATGATAGTGTACATCTGTCTAGCTGTTTGTAGCATTGATGTTGAACTATCCTGACcaaaaagttgaacttttttgCTTACCGATCAACAGAGAGCTCCATGTCTCTAAAACATGATATAAAATGGTtggactgtttttttgtttttttttaattagtcgGTGCCTTAACATTTTAGTGCCAGCACAATTTAGAAGTATCCAGTGACTCGAAGGCCTTCGAACAAACACACTTGAGTGCCATTAATCAACACTGCCTGCATGATTCAaatcaaattatatatataattataattataattatacTTTCTATGTACTTGCACAGTTGTTTTCTTCCAGACCGTTGAGCTACTGCTATTTTATGATCTCACCCAAAATGAtgatgaatttaaataaaattcttgctacactttctctttttttctttctaattttttctttcttcactaaGCAGCAGCAGTCTCCGAGCATTCACGTCATGTTTGATGGCACCAGAACAAGtttgtttatgagtgtgtgattgatttatatatacagtactgtgcaaaagactTGGACCATCTGAGAAGCCGTTTAtctgcagtgtttgtttttaaaacaggatttttgcatttcagaaaaaaaaaaaaaaagagtcagcTGGAAGAACCCGGGGTTTGTTTCCCAAACCATCtaattgtgtgtatttattaaaattccACCAGCAGCACAGCTAATACACTGATTAGCTAAAGCAGGTGTGCTAGCAGGGGTAATTTAGCAAATACGCCAGTGTACCAGGGATAGTTAGAGATACTGGAATGTTTTATCAATGAGGCTGATTCTCTGAAACATGGATCTTGTATGTTTGGGAAAACTCCTGAGCCCAGCTTTAAGCTATAAAGCTCCTAAAGCTCTGATTTAGACCTACTCGGGCTGTTATGTCATAGCTGCGTGGGAACGCCTGGACATGGAAAAGCACTCTTCATGAAGCTCGGAAAAAATTTATAACACTACTTCATGTGTGGGTTCTAATAAAGGCTacgtaaaaacatttaaaaaaaagaaactgaagaaaGTAAATTCTATTATTAGTGTTTCTATTTATATGATGCAAGATATATAGTTTTACATATTTcagtctaagacttttgcacattaCTGCTTTTTGAATGTAAACtattatatttcaaataattctATAAAATGGCCTTCCAACCTGTTGTGCTTTTTGAATTTGCTATTGCTAATAAATATGGAC
>XM_026932940.2
tgtgtgtgttctggtatTTCCCTGAAGTGCACCAGCCCTTTAACCACAGCTCCTGCTTCAGTCGCCTCACACAACTGCTAACACACCgctgtttttcttcatcacttttaCTGCTCCGTGTTTCGGTCTACAGGAATCATGTCTGCTCCCGCTGCAGAAGGTCCCGGCGCTTCAGGCGTGGCAGGAAACAACCGAAGACTGCAGCAGACCCAGGCTCAGGTGGATGAGGTGGTGGACATCATGCGGGTGAATGTGGACAAAGTCCTGGAGCGAGACCAGAAGCTGTCCGAGCTGGACGACCGGGCGGACGCTCTCCAGGCCGGAGCCTCGCAGTTCGAGACCAACGCCGCCAAACTGAAGAGGAAGTACTGGTGGAAGAACTGCAAGATGTGGGCCATTTTGATAGCTGTGCTCATaatcatcgtcgtcatcattATCATTTGGAGTAAATCTTAAAACAGCAAGAAAACGGCAGAATGGCCTGACGGCTGTGATGGGAGAgtggataaatatatataggaagtatcagctgatactaTGAAGACGGAGAGAGCACGTTCTTCCTGACGTAAAGCTGTTCTAGCCTGCTGAGTGTCacattttgtaaaaagaaaaaaatccttaactcttgtttattgtttttttcctttttttattttttgtttttaatagttGTGATTTGAATGTGCAAAGACTTACTCATCTGacgtttgtttttttcctcgcTTATTAAAATTTCACGTGCACTCCATACTTTCACTATTTGTACTTATCACAATGGCCTTAAGCAGTCAGTGGTTCAGAAGAGAGCAAAAAGAGTGCcagtttgtcatgttaaaaCTTTTAGCTCCTTCATGTGCCTCTTAAACTTTTTTAGGTAAAAAGGCGGCACTGAGAACCAGTGGAGCCAGAACGTTGTAAAcaagcctgaaatgaagaaactagtTTTTTACTAGAAACaatgtaaaaattacaaactgcaccttcttgacttcttttttttgatCATCAAGGTCACATGATAGTGTACATCTGTCTAGCTGTTTGTAGCATTGATGTTGAACTATCCTGACcaaaaagttgaacttttttgCTTACCGATCAACAGAGAGCTCCATGTCTCTAAAACATGATATAAAATGGTtggactgtttttttgtttttttttaattagtcgGTGCCTTAACATTTTAGTGCCAGCACAATTTAGAAGTATCCAGTGACTCGAAGGCCTTCGAACAAACACACTTGAGTGCCATTAATCAACACTGCCTGCATGATTCAaatcaaattatatatataattataattataattatatataataagccatataattaaaaattataattacacTTTCTATGTACTTGCACAGTTGTTTTCTTCCAGACCGTTGAGCTACTGCTATTTTATGATCTCACCCAAAATGAtgatgaatttaaataaaattcttgctacactttctctttttttctttctaattttttctttcttcactaaGCAGCAGCAGTCTCCGAGCATTCACGTCATGTTTGATGGCACCAGAACAAGtttgtttatgagtgtgtgattgatttatatatacagtactgtgcaaaagactTGGACCATCTGAGAAGCCGTTTAtctgcagtgtttgtttttaaaacaggatttttgcatttcagaaaaaaaaaaaaaaagagtcagcTGGAAGAACCCGGGGTTTGTTTCCCAAACCATCtaattgtgtgtatttattaaaattccACCAGCAGCACAGCTAATACACTGATTAGCTAAAGCAGGTGTGCTAGCAGGGGTAATTTAGCAAATACGCCAGTGTACCAGGGATAGTTAGAGATACTGGAATGTTTTATCAATGAGGCTGATTCTCTGAAACATGGATCTTGTATGTTTGGGAAAACTCCTGAGCCCAGCTTTAAGCTATAAAGCTCCTAAAGCTCTGATTTAGACCTACTCGGGCTGTTATGTCATAGCTGCGTGGGAACGCCTGGACATGGAAAAGCACTCTTCATGAAGCTCGGAAAAAATTTATAACACTACTTCATGTGTGGGTTCTAATAAAGGCTacgtaaaaacatttaaaaaaaagaaactgaagaaaGTAAATTCTATTATTAGTGTTTCTATTTATATGATGCAAGATATATAGTTTTACATATTTcagtctaagacttttgcacattaCTGCTTTTTGAATGTAAACtattatatttcaaataattctATAAAATGGCCTTCCAACCTGTTGTGCTTTTTGAATTTGCTATTGCTAATAAATATGGACTTAATAACTTGA

Function

symbol description
vamp3 Predicted to enable SNAP receptor activity and syntaxin-1 binding activity. Predicted to be involved in SNARE complex assembly. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of SNARE complex. Predicted to be active in plasma membrane. Orthologous to human VAMP3 (vesicle associated membrane protein 3).

NR:

description
vesicle-associated membrane protein 3

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K13505 VAMP3; vesicle-associated membrane protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
TU368156 False 2283 TUCP 0.38 5 19768990 19783913
TU368157 False 2248 TUCP 0.39 6 19768990 19783913
XM_026932940.2 True 2302 mRNA 0.38 5 19768983 19783925

Neighbor

gene id symbol gene type direction distance location
LOC113538092 camta1 coding upstream 6731 19535411 ~ 19762252 (+)
cdc42 cdc42,LOC103465423,LOC100691174,LOC101164400,LOC108248645,LOC107083933,LOC103386293,LOC100697482,LOC107395067 coding upstream 405000 19349748 ~ 19363983 (+)
c20h1orf50 c21h1orf50,cunh1orf50,zgc:112255,LOC105895900,LOC107654415,LOC107654365,LOC107565729 coding upstream 425920 19337932 ~ 19343063 (+)
mfsd4aa LOC108254837 coding upstream 709440 19042582 ~ 19059543 (+)
cdk18 cdk18,si:dkey-166c18.1,LOC108254840,LOC107654374,LOC107756627,LOC107698687 coding upstream 731315 18972962 ~ 19037668 (+)
per3 per3 coding downstream 3896 19787821 ~ 19809321 (+)
si:dkey-264d12.1 LOC108254813 coding downstream 31981 19815906 ~ 19834429 (+)
si:ch211-193i15.1 LOC108254870 coding downstream 99901 19883826 ~ 19894420 (+)
mmel1 mmel1,LOC107712974,LOC107654428,LOC107756657,LOC107702001,LOC107592889 coding downstream 220480 20004405 ~ 20022989 (+)
slc45a1 slc45a1,LOC107654425 coding downstream 257414 20041339 ~ 20053146 (+)
G310870 NA non-coding upstream 51654 19717081 ~ 19717329 (+)
G310828 NA non-coding upstream 207593 19561183 ~ 19561390 (+)
G310686 NA non-coding upstream 646927 19090382 ~ 19122056 (+)
G310703 NA non-coding upstream 655956 19110129 ~ 19113027 (+)
G310680 NA non-coding upstream 683476 19082369 ~ 19085507 (+)
G310882 NA non-coding downstream 27513 19811438 ~ 19811735 (+)
G310880 NA non-coding downstream 51754 19835679 ~ 19836564 (+)
LOC117599874 NA non-coding downstream 55496 19839421 ~ 19848284 (+)
G310905 NA non-coding downstream 115953 19899878 ~ 19905766 (+)
G311204 NA non-coding downstream 177176 19961101 ~ 19961315 (+)
phf13 phf13 other upstream 251805 19508189 ~ 19517178 (+)
svbp NA other upstream 270312 19494758 ~ 19498671 (+)
G310681 LOC108254836 other upstream 681177 19087025 ~ 19087806 (+)
snrpe snrpe other upstream 1076969 18687397 ~ 18692014 (+)
LOC113537865 LOC108280979 other upstream 2505320 17260979 ~ 17263663 (+)
si:dkey-264d12.5 LOC108254816 other downstream 64542 19848467 ~ 19868481 (+)
errfi1a errfi1 other downstream 335458 20119383 ~ 20177272 (+)
znf740a znf740a,LOC108254942,LOC108424621,LOC107754560,LOC107551334 other downstream 1023933 20807858 ~ 20860727 (+)
hnrnpa1a LOC108255131,LOC108424623,LOC107707363,LOC107551332,LOC107754559 other downstream 1086727 20870652 ~ 20882365 (+)

Expression


Co-expression Network