G310828


Basic Information

Item Value
gene id G310828
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 19561183 ~ 19561390 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU368163
GATTAATGGGTTAAAGCACAGTATAGTCAtccttgcagccagcactgtAGTAAATCTTAAAGATACAGTCCATAGTAAAGTGTGCTGTGATTGGCAGCGGTTGAATCCAATTAATTATTATCCTCGCCTCCATCATTCTGCCCACTGGCCTTTTGGAGAGTGCACAAATGCAGTGATGCCCTTTggacaaaaataacaacacCACAGA

Function

GO: NA

KEGG:

id description
ko05322 Systemic lupus erythematosus
ko05034 Alcoholism

RNA

RNA id representative length rna type GC content exon number start site end site
TU368163 True 208 lncRNA 0.42 1 19561183 19561390

Neighbor

gene id symbol gene type direction distance location
cdc42 cdc42,LOC103465423,LOC100691174,LOC101164400,LOC108248645,LOC107083933,LOC103386293,LOC100697482,LOC107395067 coding upstream 197200 19349748 ~ 19363983 (+)
c20h1orf50 c21h1orf50,cunh1orf50,zgc:112255,LOC105895900,LOC107654415,LOC107654365,LOC107565729 coding upstream 218120 19337932 ~ 19343063 (+)
mfsd4aa LOC108254837 coding upstream 501640 19042582 ~ 19059543 (+)
cdk18 cdk18,si:dkey-166c18.1,LOC108254840,LOC107654374,LOC107756627,LOC107698687 coding upstream 523515 18972962 ~ 19037668 (+)
si:ch211-112f3.4 LOC108254938 coding upstream 757281 18790926 ~ 18803902 (+)
per3 per3 coding downstream 226431 19787821 ~ 19809321 (+)
si:dkey-264d12.1 LOC108254813 coding downstream 254516 19815906 ~ 19834429 (+)
si:ch211-193i15.1 LOC108254870 coding downstream 322436 19883826 ~ 19894420 (+)
mmel1 mmel1,LOC107712974,LOC107654428,LOC107756657,LOC107702001,LOC107592889 coding downstream 443015 20004405 ~ 20022989 (+)
slc45a1 slc45a1,LOC107654425 coding downstream 479949 20041339 ~ 20053146 (+)
G310686 NA non-coding upstream 439127 19090382 ~ 19122056 (+)
G310703 NA non-coding upstream 448156 19110129 ~ 19113027 (+)
G310680 NA non-coding upstream 475676 19082369 ~ 19085507 (+)
G310679 NA non-coding upstream 479062 19081534 ~ 19082121 (+)
G310649 NA non-coding upstream 494697 19060335 ~ 19066486 (+)
G310870 NA non-coding downstream 155691 19717081 ~ 19717329 (+)
G310882 NA non-coding downstream 250048 19811438 ~ 19811735 (+)
G310880 NA non-coding downstream 274289 19835679 ~ 19836564 (+)
LOC117599874 NA non-coding downstream 278031 19839421 ~ 19848284 (+)
G310905 NA non-coding downstream 338488 19899878 ~ 19905766 (+)
phf13 phf13 other upstream 44005 19508189 ~ 19517178 (+)
svbp NA other upstream 62512 19494758 ~ 19498671 (+)
G310681 LOC108254836 other upstream 473377 19087025 ~ 19087806 (+)
snrpe snrpe other upstream 869169 18687397 ~ 18692014 (+)
LOC113537865 LOC108280979 other upstream 2297520 17260979 ~ 17263663 (+)
vamp3 vamp3 other downstream 207593 19768983 ~ 19783925 (+)
si:dkey-264d12.5 LOC108254816 other downstream 287077 19848467 ~ 19868481 (+)
errfi1a errfi1 other downstream 557993 20119383 ~ 20177272 (+)
znf740a znf740a,LOC108254942,LOC108424621,LOC107754560,LOC107551334 other downstream 1246468 20807858 ~ 20860727 (+)
hnrnpa1a LOC108255131,LOC108424623,LOC107707363,LOC107551332,LOC107754559 other downstream 1309262 20870652 ~ 20882365 (+)

Expression


Co-expression Network