G311207


Basic Information

Item Value
gene id G311207
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 19962514 ~ 19963668 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU368568
tcaagatgtgatagTCTGGTAAAGTGTATTctagtaattggacaaactaacataattataaatattaggattatttttaatacttggacttgcagtcaatgactgcctgaagtctggaccccatggacatcaccaaatgctgagttttcTCCCTTGAGATGTTTTGCCAAGCCTTTACTGatgccaccttcagttgctgcttgtttgtgggtctttctgccttcggTTTTGTCGTCAGGaagagaaaagcagctcaactgggttgaggtcaggtgactgcctcggccatttaagaccattcaatttctttgccttaaaaagctcttgggttgctttcgcgctatgttttgtgtcattatcTATCTGtcctgtgaagcgccgtcctatcagttttgcagcacttgactgaatctgagcagaaagtacagcTCTATACGCTTCAGAATTcttcctgctacttctatcagcagtcacatcatcaaatacaccagtgacccagttccattggcccatgtcataacactgcctccacatgttttgATGTAGTATGCTTTGAAACATGAGCCTGTCTTTCTTcatattcttctcttcccatcattctggtacaagttaatcttgtttcatctgtccaaagaatcttgttcaaGAACTGTTTCCGAGTAAAATCTAATCtgttctttctgttcttgagtgttaccagcggtttgcattgtgaagtaaaccctctgtatttacattcaagAAGGCGTCTCCTGATTGTAGACTTAGATAATGATACGCCtgcctcctccagagtgttcttgacttggctagatgtttgaaggggtttttctttttaagaatgtagaAGAATGgagatttggccctcctaaagtttctgctatctctctgatagatctgttttattttttcagcctagtgatggcctccttcacttgcatcgacacctctttggacggcatattcagagttcccatgaacagctaccaaataaaaattcaacgcttggaatcaactccagaccttttatctccatatttcatgaaataacaaggaaacaggccacacctggccattacactgcttatcagtcaattttccaattacttttgagcttgtggaaatggagggactctaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU368568 True 1155 lncRNA 0.40 1 19962514 19963668

Neighbor

gene id symbol gene type direction distance location
si:ch211-193i15.1 LOC108254870 coding upstream 68094 19883826 ~ 19894420 (+)
si:dkey-264d12.1 LOC108254813 coding upstream 128085 19815906 ~ 19834429 (+)
per3 per3 coding upstream 153193 19787821 ~ 19809321 (+)
LOC113538092 camta1 coding upstream 200262 19535411 ~ 19762252 (+)
cdc42 cdc42,LOC103465423,LOC100691174,LOC101164400,LOC108248645,LOC107083933,LOC103386293,LOC100697482,LOC107395067 coding upstream 598531 19349748 ~ 19363983 (+)
mmel1 mmel1,LOC107712974,LOC107654428,LOC107756657,LOC107702001,LOC107592889 coding downstream 40737 20004405 ~ 20022989 (+)
slc45a1 slc45a1,LOC107654425 coding downstream 77671 20041339 ~ 20053146 (+)
pax7a pax7,pax7a,LOC108255053,LOC103136430 coding downstream 216240 20179908 ~ 20237403 (+)
park7 park7,LOC107657982,LOC107701995 coding downstream 314904 20278572 ~ 20288754 (+)
kcnab2a kcnab2a,kcnab2,LOC106513833,LOC108431628,LOC108255041,LOC100709904,LOC107385277,LOC108231619,LOC103136366,LOC106923773,LOC102294726,LOC103385628,LOC107712982,LOC107657983,LOC107582417,LOC107592856 coding downstream 325326 20288994 ~ 20385659 (+)
G311204 NA non-coding upstream 1199 19961101 ~ 19961315 (+)
G310905 NA non-coding upstream 56748 19899878 ~ 19905766 (+)
LOC117599874 NA non-coding upstream 114230 19839421 ~ 19848284 (+)
G310880 NA non-coding upstream 125950 19835679 ~ 19836564 (+)
G310882 NA non-coding upstream 150779 19811438 ~ 19811735 (+)
G311225 NA non-coding downstream 32396 19996064 ~ 19996270 (+)
G311220 NA non-coding downstream 64228 20027896 ~ 20028312 (+)
G311227 NA non-coding downstream 73537 20037205 ~ 20056574 (+)
G311232 NA non-coding downstream 107305 20070973 ~ 20071359 (+)
G311246 NA non-coding downstream 146293 20109961 ~ 20110224 (+)
si:dkey-264d12.5 LOC108254816 other upstream 94033 19848467 ~ 19868481 (+)
vamp3 vamp3 other upstream 178589 19768983 ~ 19783925 (+)
phf13 phf13 other upstream 445336 19508189 ~ 19517178 (+)
svbp NA other upstream 463843 19494758 ~ 19498671 (+)
G310681 LOC108254836 other upstream 874708 19087025 ~ 19087806 (+)
errfi1a errfi1 other downstream 155715 20119383 ~ 20177272 (+)
znf740a znf740a,LOC108254942,LOC108424621,LOC107754560,LOC107551334 other downstream 844190 20807858 ~ 20860727 (+)
hnrnpa1a LOC108255131,LOC108424623,LOC107707363,LOC107551332,LOC107754559 other downstream 906984 20870652 ~ 20882365 (+)

Expression


Co-expression Network