G311220


Basic Information

Item Value
gene id G311220
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 20027896 ~ 20028312 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU368581
TGGATTTTCAATGTCTTATGCATTATTTTAAGACTTCTTGTTAATAAGCTAAACAATAAAGTAACACGTGCATGTTGAATCGTATCGCATGTTAAACCATGCGCACCTCCTAAGTGCATTAAAAGCCATTTTGAACTACAGAATTTACAACATCTGGTTCAACCTACGTCATGCATTCGCAGATCAATCATCACTAATTTCAGATGCTGCTATGTGAATACTTTTTGTAAATTTTCCTCCTtctgtgaaaaaagaaaagatcttTCAACTTGTAGACTTTAATGTAATCACTGAAGTAATTCCAAGAGGTCACTTATGTGTATTTATGAAGTTAAAGCTGAATGTGTGTCATTATAATCATCTGCTGttatgataattattttaaaaaagtgggaaaatattgttaaatattaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU368581 True 417 lncRNA 0.31 1 20027896 20028312

Neighbor

gene id symbol gene type direction distance location
mmel1 mmel1,LOC107712974,LOC107654428,LOC107756657,LOC107702001,LOC107592889 coding upstream 4907 20004405 ~ 20022989 (+)
si:ch211-193i15.1 LOC108254870 coding upstream 133476 19883826 ~ 19894420 (+)
si:dkey-264d12.1 LOC108254813 coding upstream 193467 19815906 ~ 19834429 (+)
per3 per3 coding upstream 218575 19787821 ~ 19809321 (+)
LOC113538092 camta1 coding upstream 265644 19535411 ~ 19762252 (+)
slc45a1 slc45a1,LOC107654425 coding downstream 13027 20041339 ~ 20053146 (+)
pax7a pax7,pax7a,LOC108255053,LOC103136430 coding downstream 151596 20179908 ~ 20237403 (+)
park7 park7,LOC107657982,LOC107701995 coding downstream 250260 20278572 ~ 20288754 (+)
kcnab2a kcnab2a,kcnab2,LOC106513833,LOC108431628,LOC108255041,LOC100709904,LOC107385277,LOC108231619,LOC103136366,LOC106923773,LOC102294726,LOC103385628,LOC107712982,LOC107657983,LOC107582417,LOC107592856 coding downstream 260682 20288994 ~ 20385659 (+)
akr7a3 akr7a3,LOC108255199,LOC108431624,LOC108431625,LOC107706545,LOC102201483 coding downstream 429981 20458293 ~ 20465550 (+)
G311225 NA non-coding upstream 31626 19996064 ~ 19996270 (+)
G311207 NA non-coding upstream 64228 19962514 ~ 19963668 (+)
G311204 NA non-coding upstream 66581 19961101 ~ 19961315 (+)
G310905 NA non-coding upstream 122130 19899878 ~ 19905766 (+)
LOC117599874 NA non-coding upstream 179612 19839421 ~ 19848284 (+)
G311227 NA non-coding downstream 8893 20037205 ~ 20056574 (+)
G311232 NA non-coding downstream 42661 20070973 ~ 20071359 (+)
G311246 NA non-coding downstream 81649 20109961 ~ 20110224 (+)
G311395 NA non-coding downstream 347701 20376013 ~ 20376698 (+)
G311407 NA non-coding downstream 367442 20395754 ~ 20396286 (+)
si:dkey-264d12.5 LOC108254816 other upstream 159415 19848467 ~ 19868481 (+)
vamp3 vamp3 other upstream 243971 19768983 ~ 19783925 (+)
phf13 phf13 other upstream 510718 19508189 ~ 19517178 (+)
svbp NA other upstream 529225 19494758 ~ 19498671 (+)
G310681 LOC108254836 other upstream 940090 19087025 ~ 19087806 (+)
errfi1a errfi1 other downstream 91071 20119383 ~ 20177272 (+)
znf740a znf740a,LOC108254942,LOC108424621,LOC107754560,LOC107551334 other downstream 779546 20807858 ~ 20860727 (+)
hnrnpa1a LOC108255131,LOC108424623,LOC107707363,LOC107551332,LOC107754559 other downstream 842340 20870652 ~ 20882365 (+)

Expression


Co-expression Network