G311444


Basic Information

Item Value
gene id G311444
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 20579953 ~ 20583595 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU368841
tcacacacacagctatgtGCTGATAATCACGATATTCTCTAATCACGATAATCACGATCTCAATTCTtctgtatttgatttggcaggAAGTCATCTGGGTATTCGGCataaagaaagtttttttttttaattttagtcaaATCTGAGATTCTCAAACAAGGAAATCAGATCATTCTGTTCACCAGCGAGTTACTGAAGTTGTTTTTTCCACCCAATGATACAAGTTATTATTTCAcgatattaaaaaaagagaagattcGCACACGTCTGTCGTTCTTCTGAAAGCTCCTGTGCTCGCTCACTCATCCTGATTCCcattttaaagagagaaaaaaaaattactcattTGAAAATTGTCTAATTTTAtctaataaacaataaagtcAGGTTCTGGTGTAATTCTTTAGAGTTCATAAGCAGCATATTGTTGGAGTCCAACAGCAGTGATGAAAACAGACAAATTTTACAAAGCTGAGAAACATATAATGATGGAAATACTACAATCCTACAGGAagtgactttttaaaaagtttagctgtcttttttttaatgtttttttcttccaaagtttaaaaaaaatgaacttgtCAGAAAAGCGCTGAGTGACTTCCAGCGTTTGAagtcctgaccaatcaggtcgcAGTTTAGAGGGAAGTGTGAGGAGCACAAAAAGAACTGCTTTTCTGAAAACAAAAGCAgcataaatgaaaataatcttCTCTCTGATTCCAAAagcagttatttttttattcatgtgcacttttttttctttgtatcttTAATATATCAGTACGTGTGTGTTGAATCATTCGAAGAGGTCAGAGAGGAGACAGATCTTAACCATGTGTTTATaattctgagtgtgtgtgaataaataacagtagtttcagagctccacacacacacacacacacacacacacacacacacacacacacacacacaggcgcagTATAGTGTAGTCTGTAGGTGTGGTTGTATGACGTACACATGACTTTGCACTGCCTTTAACGAGTTgccaaaaaaaccaaacaaaataaagcaaaaaaacagcAGAGGTGTAGTGATGGATGAAGAAGCAGTAGGTGGGCAGATTTGTGGGTGGATTTGTAGATGTCTGGACGTCAGAAACAGAAACGTCTGAGGTGAAGCGGAAGTGAAAAAGTGCCACGCTTAACTGGCTGAAATTTGCACTAGAACAGGAAACGGAGTTACGTGATTAATAAAACACGTCTCGCCGCTgagctgtgtgtttctgttcggtttgttttcttcctctctgcACGGTGGGACGTTTAAAAGTCAAGCTCAGGATTTTCctctctttattattaattattcccAGCGTAAGAGCGTGATATCTAACGTAGGCGTGTCTCGATAATTAGTTAACGTCCGATAACAGAAAATATCAGACGGCTGCTGGATCCTTTAACGCGGTTTGTGTAATTTTAAGTGAATTTAGCTAACATTTCATGTCTATTCCCAACAACAGGAAACCCATATATGAttgttgctatggcaacatCTCAGAGGGCGTAACTCGCTCTGCGTGTTTCTACGTGTTAATATTTAAACCGCCGTTTTTATCCATGGAGCTGGAGGCGGGGCTTTACTGAGCTCTGTTTCTGATTGGTGCATCAATTTCAAAAGGCTCCACCAATCACAGAGCGTCTGGTGGAAATTCATCCAGCGTTCAACAGCTTGGCGtcattaattaactaattactgaaataaagttaaaaaaaattaagtatgtAAAGACATTGTGCCACAGGCATCAGGATACAGTGCATCgtgtattattcatttatttaatccGGTCTGAAAATCTTCTCTGCGTTTTTGATAAAAAACATTAGCATGTGAATATAGAAcggtcagttttgtttttttaatgattatttatttcagtttcctGAGTATTTTATGTCAGAAACATTATTTcaaagagaggaagaaacacAGCTcccctgtttatttttaaatatatagtctacagcctgaaaagaaaaatacaaatcgGATGCACATACGGCTTTAATGAAGCGGAAAAAGTTTACAAACGAAAACGTGTCCCTTAAATACTTGATTTCTGAAGGTTAATCTGTCAGGACTGGATTATTACGTTATTTTGGGAAGAATCCCATGTTTACCTCCATGGACGTTTTGTGTCCCGCTTTACTTGAAGAAttagtttaaggcaataaaacGACTTCTTGTGTATTTTGgatgaaatttatttttaaggaatTTGCCTTAAACCTAAAGGTGTAGTGTGAACACTCACAGCAACGCGGAAGTGAGAAAGTAGACGCAAATATTGACTGAGAAGCTGTGAGTAAGGCTCCGCCCCCAAGGGAGCACAACCAATCGTAAGGCTCGGTGCCGCCCCTAAGGAAGCACAGCCAATAGTAAGGCTTGGTACCACCCCCAAGGGAGCACAGCCAATCATAAGGCTTGGCACCGCCCCCAAGGGAGCACAGCCAATCATAAGCCTCGGTAACATCCCCAAGGAAGCACAGCCAATCGTAAGGCTTGGTGCCGCCCCCAGTGGAGCTCAGCCAATTGTAAGATAAATAAAGTCTTGTTTTATCACTAGATTATTTTTGCTGCACTTTCACACTTGTCAGTCCCTGCATCGAGTCTGAATCAGAACtaaattgattcttttgattcgTTTGCTGTTCGGGTTTGTTTAGCGTAGGGCTGAAAATGTCctcataaaactctttcatCCTTTGGTCAGgattacagtgatggaaaaacataaacaaacctttacaaacgaagtgtgtgtagaaatcacaaaaatcgcCCGAGcacggagaacacggagaacacggagaacatggagaacacggaGCTCAATAAAAGCTGAGATAATTAGGTAAATAACGAGTTCGCAGTGTTTATCGTCTCTGTTTTGTTCGtcagtccaaatctccagaacacacgccatgtttgattcacttcctgcaggggagtcgattcagagtcgaatcactttctcactagGGTTCACTTGTAAGCAGATGGAGACCACCTCGCTCTGACGCTCTCGGACCCGAGTGTGTTCTGACCCGATTAAAGAACCGCACCGAggaggagaacacaccagggttctgttcagacacactgaacactaagCACACTGACTCACTTCACACTCAACCACTCTCATTTATAAAGTTGGAAAAAACCTTTTTAATGGAAGCTTTAATTTTACACATcagccttacacacacacacacacacacacacacacacacattcaatccTTCAGctcatttttgtcattaaacTCGGATTGATTCGTGTCGTGTGCCGATCGCAGGAAGTAAGACGTGTTTGGaaagtgtgaaataaatgaaataaccCTGTTATTAACCTGCaggcttcatttttttaaccGCAGcgttaatgtttgttttgttttataccGTGTGACGCAGACGATGAGTTTTGTTCTGTGGCTTGGAATTGATTTAAATAAAGAGCTGGTGCTTAATTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU368841 True 3514 lncRNA 0.40 4 20579953 20583595

Neighbor

gene id symbol gene type direction distance location
ankrd52b ankrd52,LOC108255001 coding upstream 3593 20546892 ~ 20576360 (+)
cnpy2 LOC108255003 coding upstream 41321 20534127 ~ 20538632 (+)
nab2 LOC108255101,LOC108431520 coding upstream 72769 20495896 ~ 20507184 (+)
akr7a3 akr7a3,LOC108255199,LOC108431624,LOC108431625,LOC107706545,LOC102201483 coding upstream 114403 20458293 ~ 20465550 (+)
kcnab2a kcnab2a,kcnab2,LOC106513833,LOC108431628,LOC108255041,LOC100709904,LOC107385277,LOC108231619,LOC103136366,LOC106923773,LOC102294726,LOC103385628,LOC107712982,LOC107657983,LOC107582417,LOC107592856 coding upstream 194294 20288994 ~ 20385659 (+)
LOC113538122 LOC108255274 coding downstream 13157 20596752 ~ 20603064 (+)
LOC113537838 NA coding downstream 34696 20618291 ~ 20621239 (+)
si:ch73-267c23.10 LOC108255296 coding downstream 50155 20633750 ~ 20650173 (+)
slc2a10 slc2a10 coding downstream 70590 20654185 ~ 20661689 (+)
smug1 smug1 coding downstream 313385 20896980 ~ 20901411 (+)
G311460 NA non-coding upstream 35400 20544021 ~ 20544553 (+)
G311471 NA non-coding upstream 58145 20519861 ~ 20521808 (+)
G311446 NA non-coding upstream 104266 20473896 ~ 20475687 (+)
G311447 NA non-coding upstream 106156 20472823 ~ 20473797 (+)
G311414 NA non-coding upstream 163774 20415584 ~ 20416179 (+)
G311515 NA non-coding downstream 79173 20662768 ~ 20665745 (+)
G311516 NA non-coding downstream 82672 20666267 ~ 20668273 (+)
G311507 NA non-coding downstream 99236 20682831 ~ 20685069 (+)
G311506 NA non-coding downstream 101572 20685167 ~ 20690740 (+)
G311508 NA non-coding downstream 183483 20767078 ~ 20804924 (+)
errfi1a errfi1 other upstream 402681 20119383 ~ 20177272 (+)
si:dkey-264d12.5 LOC108254816 other upstream 711472 19848467 ~ 19868481 (+)
vamp3 vamp3 other upstream 796028 19768983 ~ 19783925 (+)
phf13 phf13 other upstream 1062775 19508189 ~ 19517178 (+)
svbp NA other upstream 1081282 19494758 ~ 19498671 (+)
znf740a znf740a,LOC108254942,LOC108424621,LOC107754560,LOC107551334 other downstream 224263 20807858 ~ 20860727 (+)
hnrnpa1a LOC108255131,LOC108424623,LOC107707363,LOC107551332,LOC107754559 other downstream 287057 20870652 ~ 20882365 (+)

Expression


Co-expression Network