G311446


Basic Information

Item Value
gene id G311446
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 20473896 ~ 20475687 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU368843
ACTAATATTCATCAATCTGGACAGAGTTTCCTCCAAACGCATCACAGTATTAAAACCAAGTCACGTGTTCTGTTAGCGTGTGCACTACGTGCGTCTGTGTGTGACGTGACTCTAAAGTGACCGTCTCATGAGAATTATAGTGAAGATCgtggctttttcttttctctcaggATGTGAATGATGTAGAATTCGAGCACAGTTCTGTTTCGGTGATAAGATTAACATCATCATTGGCTGCTTTGAGAAAAACGTGAAATGAACGAAAGCAGAAACCGTCGTGATTAGCATAACTTTTTcctagagatgtgtgtgtgtgtgtgtgtgtgtgcgggaaACGAAGGAAATCtttttgtttgcacctgccTTATTTAATGAGAATATAaaggatttattattttgagcaggataaagtgtttgctgaagatgaacgaataaACAGTCGATACGTCACTGAGCGCTGAATATTAACGCACgtcatctttctttttcacgTGACTTTTCTGTGCTCAGtccaatgcacacctctactcTCTCTTTCAAagtgcttctttatttttttaatcgttCCAttcgctttttttttcagttcgtTCCAAGCAAGtggagaggtttttttttcaggcgtAAATTTGCAGAAAGTCATGATGAAATGTCATGAgtagtcaaaaaaaaattaaacacccATAATGTCCCTCTTAACCTAAATGCAGTCTTTCAGCCAAGACAAGTCCGGAGTTAACGATGAATGAAAGTCTGTTTCGCCTGAAAAATTTATATGCGACAAGTTGTTTCATTTCGTAAAAAAAATACCAGTTATAGTTCTTCTTTAATTGAGCATAATTTCCAATCTTCAGTTATGGTTTGCTTTACAGATGAGATTTGGGTGAGATAGACTTACATTACTTGGTACAGTAGCTACGTTATTcttatgttttaatgtttaaagtttaaactaACCCAGCGTTCACACTAGCtagtctcttgtgggcgtggcctatcaGCCTATCTGTTCCAGTATACGTGGTTATAAAGTTTACAAGCATGAAATAGgaagctgtgttgtttttttccattttgaaatGCAACACGAAGTGGGAACTAAAAACAGGAAGGAACCCAAGCAGGGGTTTCAGGTGACGTTCATACAAACGTTGCGGTTCATTCTGAAGTGATGAACCCTACGCAAGGCCACAGCTGCCTTCTGTAGAGTCTTTCAAATATCATTTAGTTCAAAATGGTCACTTTCGAAATGGACACTTTGCTCCTGAGTCTCTTTCTTatactaaatgaaaaacaacGGGCAGGCGTAAACGTAGGTTAGCTTCAAGTAAGAAACGTTGTATTGGGAAcgctaaaatgaataaaacagatgaaagtagcgcagcagctaatAAATAGGTTCTGTAGGTTTCATGTTTTTGTCAAGATCTCAGTTAATAGGTTATAGCTTGCACATTTGGATTCGTCTCCACAAATCTAAAAGATACGATTGCGTGAACAACAGCTCCTAAATGAAACTCGACAGTGGCGACAGTGATTTTTGgtgttcattattaaattgCTGTATTCATTCTTTTGCTCGTCTCAGTGATTGTGACAAAAACACCGGCTTCGGCTGTGTAAGTTGACGATCAGGTGTGTTCCTTGTTAATTAATGACAGCGAGGGGCGGAGTTTTAGGAAGGAGCAAGGCGTAGTCAGGATCAGGGGGGAGTCATGCTGCCTGTTGCTCGCGTGTGTAAAGCGCTGGGTAAAGATGCAAATTccagacaccaaacatgcctTGGCTGACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU368843 True 1792 lncRNA 0.40 1 20473896 20475687

Neighbor

gene id symbol gene type direction distance location
akr7a3 akr7a3,LOC108255199,LOC108431624,LOC108431625,LOC107706545,LOC102201483 coding upstream 8346 20458293 ~ 20465550 (+)
kcnab2a kcnab2a,kcnab2,LOC106513833,LOC108431628,LOC108255041,LOC100709904,LOC107385277,LOC108231619,LOC103136366,LOC106923773,LOC102294726,LOC103385628,LOC107712982,LOC107657983,LOC107582417,LOC107592856 coding upstream 88237 20288994 ~ 20385659 (+)
park7 park7,LOC107657982,LOC107701995 coding upstream 185142 20278572 ~ 20288754 (+)
pax7a pax7,pax7a,LOC108255053,LOC103136430 coding upstream 236493 20179908 ~ 20237403 (+)
slc45a1 slc45a1,LOC107654425 coding upstream 420750 20041339 ~ 20053146 (+)
nab2 LOC108255101,LOC108431520 coding downstream 20209 20495896 ~ 20507184 (+)
cnpy2 LOC108255003 coding downstream 58440 20534127 ~ 20538632 (+)
ankrd52b ankrd52,LOC108255001 coding downstream 71205 20546892 ~ 20576360 (+)
LOC113538122 LOC108255274 coding downstream 121065 20596752 ~ 20603064 (+)
LOC113537838 NA coding downstream 142604 20618291 ~ 20621239 (+)
G311447 NA non-coding upstream 99 20472823 ~ 20473797 (+)
G311414 NA non-coding upstream 57717 20415584 ~ 20416179 (+)
G311407 NA non-coding upstream 77610 20395754 ~ 20396286 (+)
G311395 NA non-coding upstream 97198 20376013 ~ 20376698 (+)
G311246 NA non-coding upstream 363672 20109961 ~ 20110224 (+)
G311471 NA non-coding downstream 44174 20519861 ~ 20521808 (+)
G311460 NA non-coding downstream 68334 20544021 ~ 20544553 (+)
G311444 NA non-coding downstream 104266 20579953 ~ 20583595 (+)
G311515 NA non-coding downstream 187081 20662768 ~ 20665745 (+)
G311516 NA non-coding downstream 190580 20666267 ~ 20668273 (+)
errfi1a errfi1 other upstream 296624 20119383 ~ 20177272 (+)
si:dkey-264d12.5 LOC108254816 other upstream 605415 19848467 ~ 19868481 (+)
vamp3 vamp3 other upstream 689971 19768983 ~ 19783925 (+)
phf13 phf13 other upstream 956718 19508189 ~ 19517178 (+)
svbp NA other upstream 975225 19494758 ~ 19498671 (+)
znf740a znf740a,LOC108254942,LOC108424621,LOC107754560,LOC107551334 other downstream 332171 20807858 ~ 20860727 (+)
hnrnpa1a LOC108255131,LOC108424623,LOC107707363,LOC107551332,LOC107754559 other downstream 394965 20870652 ~ 20882365 (+)

Expression


Co-expression Network