G311482 (hoxc12,hoxc12aa,hoxc12ba,LOC107578812,LOC108433365,LOC105912699,LOC105013633)


Basic Information

Item Value
gene id G311482
gene name hoxc12,hoxc12aa,hoxc12ba,LOC107578812,LOC108433365,LOC105912699,LOC105013633
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 20927003 ~ 20983511 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU368902
tccgcTCCCTCTCTCTTGCTGAggacatattttaatattagacAGGGTGACCGACGTTTCACCCCGCCATCAGATCTGTTTCAATAGTTCACTGCCAAGGAGTTATTGATGAGACACCGCCAATGAAATTTGTCCCGATACAAAACGCCATTTGTCCTCCCTTCATCCACACGACTGAATGTAGACTTAATATGCGTCAAGACCCTGATGCTTTCTGAAAGATGTTTGTCTGGGTTTTGTCttaaactacattttaaagCGTGTTTTCTGTCAGTAATAACTCGCAGGTAACATTTAAGAGTTCAACTAAATTACATGTATTATAGATGTAGTGCTCGCTAAATTATAGTCATCTCCTCATCTCCAAAACCCAGgagccaataaataaatacattatcatCTGTTCATGTGGCTGCAGGTAGTTTTATGATAACTGATACCCTGAGCGACTAGCTGCTTGAaccgaataataataataataactgtaataataataataataactgcaaTAAGATATACATTATAATTCAAACTATTACTCGGTCTTTtctattgttgttattattattagctctctgtgtgtgtgtgagtgagtgagtgagagagagagagagagagaattaataCGTTGTTTTGGTTTCAGCATTAAGGCCTCGTGCCTGTGGGCCAACTTTACTTTCTATTTCCGCTTGATGCCTTCCTTGCTAATTACCTTTTGAAAATGAACTCCATCATAATGATTATGCAATGcagtaagattaaaaaaaatagatgcatCCTCAGTGCTGAGAGCCACGTTTCACATTTTAACTACAAAAGCAATTTTTCTAGCATGTAGGCCTTTTAACACACAGAGTACCTACACAAAGCGCGAGGTGAAGGTGCAAGACTAACTTcaacacattacatacataacaAATCTATTAAGTTCCAAATAAACTAGCAAACTCACAGATGAAAGTCTTTAAccgaataagaataaaaatattttattcaccagtttttaatgcattaattgtCTCCTCAAGAAGATTCTAAAAGATATCATAAAGACATTATATTAATGAAGACTTTTCAAGCAAAATACTTGTCAAGTGCAGAATCCACTTTAGATAGTAAGTGGGATTTCCTGTCAGAttctaaagagagagagagagagagagagagagattgttagccAAGCctaataagacagaaaatataatctctctcttttaatgaacataaattaAGCAGAAAAGCTAAACGTCTTGTCCATTTGCACTGAATTCATAGTCGACAAAGTGGATTTGAAGCTCCTGACGCTGTAAAATAacatcacaaaacaaaaacaaggaaaCTCGAAGCTTAATAAGATTAACCAGAGCATTTAAAAAGCCTAATTGAAACACATTAGCTCGGGGAACACCACGAGCATTTGCTCAGGAAacattaaatgaacattttctgaagaaaacATTGAATTAGAGTATTAATTAATCCCCCCAGGGTGGTGGAGGGGCACGTGACTATTTCATTACGAGTTAGGTTATTAACTTACAGCACCATTTTGGAGTCAAAAAATCATCCAGGGGACCCTCTGTGGTCTTCTGTCCACTCGCATGGCCTTAACTCGAGGGCTTGTTTTGTCACTTCTGCCTATAAACCATAAAACTTATTCTAATGGCGTCACGTGCTGCACGCGagccactcacacacacactccctacaGGCCTCATTCAGGCtgcaaaagtttaaaaaagtggATAAAAACACGCATCCGCACGGGTTCTAGCTGTGGTCAgtgctaaatatttatttttattattaataataagtttTGTTATTGTGGGCTTTAAGCAACGCTGCAGTGGTGAGTAACCTGCATAATTTATAGGCCATTACTTAAAATAGATGcgttaatgtacagtgtgtgtaatattaatcagattatgtttgtttgtttatttatttatttgcaataaCCCTCTGTCTGaaattggacttttttttttccaaatcattGCTTTAACTTCACAAATATGAGTAACGTGATGAAAAATTCGTATAATAAATATCTGTATTTAAGGTTGATCTATTAACTATTCATTTAACTCGAAAGActttcaaaagaaaatattttacatattaagaTTTAATTtcccattttatttgtaatatgtaAGCTACCATAGAGTTTAATATAGCCTACAactccttattattatttaactgcTTTTGTATTCTTATTAATAAAGGACTAAAACGTTACGTAACTCTGGAATGGACATCAGAGTCAGGACAGCAACCAGTCAGAATAAAACCTGGTCTCATTTCCCATCTGTTTCAATAGACAGGATACAACTGTCGTCGTTTTAGAGCCATAAAGTTTTATTAGGTGTCAGGGCCATAAAACGTTTTACAGGCATCTGtctgtactgtaaataattaCAGAGGAACTGAAGGACAGCGcgaggaaaagagagaggttAGCCTTTCAAACCTCTCCAGTGTTTTTAAAGCTTATTTTGAGATTAATTCCAAGACCTTTTTCTCCTAAGACCTTGTAACGGAATCCTATGAATTTCTGCcctgaacaagaaaaaaaattaatacgaTTTTAAGAATTGGTTTGTGAAACGTGATGGAGCACATAGTTGAAATTCCTTCAGCTGACATTCTGGAAATAATCCTGACACTTTGCGGATGTTGTTATTTGGACAAGCGACATGAGCGGAAATCACTCAGTGTCTCTTTAGCAGCTGAGCATCGAATtaacacacaactcacacacacatacacacacacacacacacacacacacacgactcacACAAGTGGCACTTTAAGAGATTTTATTCAGTACAGGATTTTCATTTATTGCATTGAATCCATTATTTGCACAGCCATGAGGATTGTTTAGCCTGTGTGCAATATTTCCAATATACAGCATCTGCTTTGTTAGTGACTTACAATAAATACTGAagttcttaaagaaaaaaaagggaaaaaaaggaaaagtctTTTATCTAAGCTTGTAAGTCAGTGACAGAATAGAACATCAACAAAGATCAAGGATTAAGCAAAAGGTAAACCTGTAGTCATGTGCACTGACCTCGGTGCAGTGTCTCATAGCAGTTCTGAAGCGTTGTAATCTCATAAATTAGACAAAAATACATCTTTgcacgtttatattaatatatctcAGTATTAGGCCTATATTTAAGTGCTCTAACTCCAGCATCAGTGATGCATTCTTACACTCAGACCTATTACAGTGTAAAAATGACACTCATGGGTTAATATCAGTAGTAGGCTTGTGCCGATCATTTGTTATTGGATATATTGTGGACATGATGCTCTCATCACGCTCTCATAACCCTCCtgagctttatttattattttggagGAGGATTCCTCACTAGGTGGCCATTTTGGGCAGCatcccaaaaaacaaaaaataagtctgCCCTGTCTACAGTGCCATAAGACCTGGGTATGTACAGGTTCCGTGTTATAAATGAATTTGAAGGAGCAGTGCATGTGCACTTCCTGATGCACTTCATCTCCGAAGTTCACTAAAAGTTAAACATGGCGGTCTGCATCTTCATGACTCAAGACTagagaggattaaaaaaaatgcctacacactcagaaaaaaatagtactaaactgtacctttccttgtctctGCAGTAGTGCCTTTTTATCTTTTGTacgtttttgtatttttcacctggaaatgtggatagtGCACgtttaaaaatggtttaagaTACACACATGGTGTACATTATATCCACATTTCTAGGTTAAATATATACAGGCTATTAAAGCTACAGCATCTGTACCCTTGAGGGTGCAACCCAAACAACAAGGAACTGTATAGTTgggtactgtttttttttgtttgttttttgtttttgctgataTTTCATGCACTGCTATTCTTTCcctaaaagaaagacagagctTGCTCTCTCAGCATCAGTCTTTTCTTCTTCATGCGTCGGTTTTGAAACCAGATCTTCACTTGTTGGTCGGATAAATTGAGCCGGTCCGAAAGCTCCTTCCTCCGCTGCCTCGTTATGAATTCGTTGAGCATGAACTCGCTCTCGAGCTCGGCCAGCTGCAGTTTGGAATAGGGTTTGCGCTTCTTCCGGTTCCGCGCGTGCGCCGGATACCACGGAG

Function

symbol description
hoxc12 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU368902 True 4170 lncRNA 0.37 2 20927003 20983511

Neighbor

gene id symbol gene type direction distance location
smug1 smug1 coding upstream 25592 20896980 ~ 20901411 (+)
slc2a10 slc2a10 coding upstream 265314 20654185 ~ 20661689 (+)
si:ch73-267c23.10 LOC108255296 coding upstream 276830 20633750 ~ 20650173 (+)
LOC113537838 NA coding upstream 305764 20618291 ~ 20621239 (+)
LOC113538122 LOC108255274 coding upstream 323939 20596752 ~ 20603064 (+)
calcoco1b LOC108255279 coding downstream 49612 21033123 ~ 21046577 (+)
LOC113537842 LOC108255161 coding downstream 129923 21113434 ~ 21135134 (+)
faim2b LOC108255062 coding downstream 154298 21137809 ~ 21149284 (+)
lrp1aa LOC108281054,LOC108424569 coding downstream 227741 21211252 ~ 21371670 (+)
alas1 alas1 coding downstream 427265 21410776 ~ 21435824 (+)
G311486 NA non-coding upstream 42162 20882446 ~ 20884841 (+)
G311489 NA non-coding upstream 83548 20842278 ~ 20843455 (+)
G311508 NA non-coding upstream 122079 20767078 ~ 20804924 (+)
LOC113538073 NA non-coding downstream 22839 21006350 ~ 21012460 (+)
G311649 NA non-coding downstream 167287 21150798 ~ 21155101 (+)
G311652 NA non-coding downstream 175946 21159457 ~ 21164926 (+)
G311653 NA non-coding downstream 178407 21161918 ~ 21164080 (+)
LOC117599907 NA non-coding downstream 183469 21166980 ~ 21185039 (+)
hnrnpa1a LOC108255131,LOC108424623,LOC107707363,LOC107551332,LOC107754559 other upstream 44638 20870652 ~ 20882365 (+)
znf740a znf740a,LOC108254942,LOC108424621,LOC107754560,LOC107551334 other upstream 66276 20807858 ~ 20860727 (+)
errfi1a errfi1 other upstream 749731 20119383 ~ 20177272 (+)
si:dkey-264d12.5 LOC108254816 other upstream 1058522 19848467 ~ 19868481 (+)
vamp3 vamp3 other upstream 1143078 19768983 ~ 19783925 (+)

Expression


Co-expression Network