G311483 (hoxc6ba,hoxc6,LOC108255268,LOC105016985)


Basic Information

Item Value
gene id G311483
gene name hoxc6ba,hoxc6,LOC108255268,LOC105016985
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 20932678 ~ 20943629 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU368903
GCTTGAACTGTTTATGATTAATCCAGATTTTTATAGGTGAAAGTTTTTTCCATCTTCATTTGCTATTGGCCAAATATAGATCGTTTCAAGTGGATCACGTGCTTGTTTCCTCCAGTCATACATTTGGTTAGATCATGTCAGGGCTTTATTAATGGAAATGTTAAAACATGATAAGTTGCGCAACAGTGGCACTCGAAAGAAGGACCAATAGCGTCACCTGGTGATTAAGACTGTACAGGACAGGGGATTTCATTCTGCTACATTTAATTCCTTATAATCTTTTTGTTGATTTCACACCAACAGCAGAAAAATAGAGAAATCAGACAGACGTCATTAGGAGTCATAAGGACAGTTACCCATGAAATACTTTTGCTGTGTTTTAGTACAAGTGACTTTGTGTAAGACAATCAGATGCTAAAGAAGTTAAATTTAAAACACCCAATTTTCCATCACATTAAGAGCATCACTGTCTTAGACAACAAAACATCAGTccaaatactactactactactactaaataaTGTAAGTATTTGTTAAAGTTAAAACTAATTAATTAGAACATGGAGATTGTTGTAAATATCagaattttagtttttttttcgaTTGATTAAATTAATTTGATAAATTCGCGCACAGGTTCAGCATCCCGTTGCTGTAATTTGCGCTTTTTACTCTGAACATTTGTGCCCTCAATattgttcttcttttctcttggTTTTGCGTGTAAATCCAGCACAGGACCAAGGATAGTTTAGTGATAATTTAGACTTAGAGCTGTCTGGACTGTTCACAACCAAGCTAATGTGTGATTATTGTGATAAACGATATTTAATGAATTGAGAATTTTAAAGTTACTGAATTAGGTTCTAAAATACTAAACTGAACCGAGTTTTCCGAAAAGCATAAAATATCGTTTTACTCTCCCAACCTCAAGTGCTTAACGTTTGAGAAATGTGGCCCTGACCAACTACCTTTACATTTCAATAAGTTTCCGTTAAAGTTTTACTAAACAAATTTCACCTAATtctattaaaataacaaaatatagaaGCAGTGTGACATAATACGAGAATTTCTGGCggaattatattttaataacctTCAAATCTGCCACATACTTTTGTTTCCTGttcatttggcttttttttttttgctgtacaaGTGACTTCGTTAGGAATTTAACTCACTACCATAAGCTATGGttttaaatcattacattacagttttatatgcattaaatcattttagttGACTTGTTTTAAGACAGTTTTAATAAAGCCTTTATGCTGTTGTTgtattttggcttttttttaaattcgcCAAAATATGCATTATTGTCTATATCTGAACCTGAATCTGTTAGCAGGGAAggatcatttcattttcaactctcactttttgattttttttcttcctcatgcgTTTAAGGGTAAAGAAAAGCTTTCAGATGATTCTAGTGACACTCTAGTTTAAAACTCGTGCactgaatattttctgaatgaAAGGCACCGAGAGTTCTAGGCCTACTTGGTTAGgaaagtttttaatttatttataagtttattattataggttttttaaattaattttttgttattttgaaagTCTCTGTAACCTGAGCTCTCGTTGATGGTCCAAATCTCGAAATTCACTTCCATAAATAAAGCCAAAGCCCAGCACTGCACTGCTTTTAAACATGTCCATTTGTCCGATTTGGTGCTTCTTGGAGTCAGTGATATTTGTTTGTATATTAAGCATTTAATATCGCGAGGTTTTATACTGTATAGTTTATACACTTTTGTTACACTCCATTGCAATATTTTAAACCGGTTTCAAGCTGCTCTTTTGATCTACAATCTTGTAATCTAGAATGTAGTCACATTTTGTAAAGCCCGAATAACTCGCACAGTACTTGCTGAAATGCTATTTGTACAAATAATCCTAGTTCCAATAGTTTGTTAGccgattttttaaaaatatggaaaCAACATTTTAGCAAAACGTTTAAACTTCTGAGCGCTAGGTTACATTTCCAGCAACAAACTGGAAAACGCTCAAACCTGGTGTAATTTAGctaaagtttttatttgtttatttattttaaatattgtctTGTCAGCTTATTTATAGACGTTCTGTTGGCTATTTTTCATGGTTtcatgtaaacaggaaatttgGGCTCCTTGTTCGAATGAAGAGTTTAATTCTTAAAGATAAAATATAGGAAAATGTACATAATTATGACACATATGATGTTTGACTTTTTGAGAATCATTTCAGGAACTGTAGTAAGCGATGTGTTCAGGGGCTTATCATGATTTTCTGAATCTAATATTGCTAATGCTGGTGCAATATCAAATAACATACAAGTGACACAGATTAGACTCGTTGAGGATACatgttgatgtttatttaaaaatgataccAGTTCAGTAGGTAGTTTTATATAACCAAACATTTGCTTGTATGCATGGACGAGACCCACAGTTATAGTCCATTATTTTTTGTCTCATGGCGTTTAACAACTAAGGCAAGGTCATTTCATATAAACATACTTTCCATATATGCAAATGTATACATAATTATGAATTGTCAGTTTCCGCTCAGATTTTAATCCGTAACAAATTCGGTAGGTAATGTCAACAGGTAGCTTTATATAACCGTACTTTTCTATATGATGAATACGTGGAGTATAGATATACGTGGAAAAGCCACAATTATAGCGCATAACAGTTTGTGAGGCAAAAGTCAACAGGTAGTTTGATTGATAGGTAGTTTTTAACCATATTTTTCAATATACATATCTGTATGAAATATCACACATAATTATGGCACATGGGTTTTTTTTAGGTAGTTTCATGTATATACAACGTGcctgatgcaaaaaaaaacaacaacaaaaaaaccactACTCCTTAGTGTCACTCGTGGATCCTTCTGTAACCTCTTTCCCTGTTTCCTGTTCGTGTAGAGTGGAGGTCAGattgttctcttttttccatttcatcctGCGGTTCTGAAACCAGATTTTAATTTGTCGCTCGGTTAGACACAGCGTGTTGGCGATCTCGATTCTTCTTCTCCGTGTTAAATATCGGTTGTAGTGAAACTCTTTCTCCAGCTCCAGCGTTTGGTATCGAGAATAAATCTGACGACCTCTGCGCCTGTCCGAGCCATAACCAACAcctgaggagaagaaaagataAAGTGATTAACTTCAGGAGGAACAATAATGCTTTAGGCTCTGGACAATTCTCTCCTGTTTATGGTGTTTTGTTCAACACTGTGATTTTACTAtgaactcacacacatgctaacTTATACATCACTACCTCACAACTTCTACACGCACACCACAACATGTCTGAGAttatctaaaatatatttagtttGTGACTGAACATGTAGCAACTCTGAACTTATTTTTAATACCCAGTGAGAGTACTGAACAAACCTTTAACTTAAACTCAGTTCTGCTGAAATTGGACATGACGAGATCATTATTCAGGCTtttcacttttgtttgttttgagcaTAAACATAAGCAATAAAATTTCCCTGATAAACACTCTTTTCTACAAACAGCGCCATAAAACTTCCCTCttttatggttttgttttgaaagtTTTTGCTGGTTATTTTTTGACCAAATGGGATTTATTTCCCTGAGTGATAAGACATTTACTGCCAGAGCGACAGTGGAGCTCTGTCCAGTGCTTTATGGggcaataaaacaataaaaacccaaATTTCTAGTTgcagtagtaaaaaaaaaaaggctgtataGTCCATGCAGCTCAAACTGTGTCTctttaaatcataaataaataaataaatcttgtaAACTCACCGCTGTGCGAGTTCATTCTCTGCATCCAGGGATAAATCTGTATGCTGCCGCTTTTTGGATCCTGGCACGCGCTTCTGCACTGCTCTAACGACGGTGAAGTTGTGAAGTCCTGCGCGAAGCTTTGTCTGCAACCGGAAATCGCGTCTTTGTCCGAGTAAAACGCGTTGGATCCGTAGTCGTACGGTGCGCGGCTCGCGCCGAACATCACGTCTTCCTGCGGCGGGTAGAAGGGCGCGCGGTACATCCGGTTAGCGGCGCCATAGGACGACGGGAAATGGCGGACCACGGGGTCGTAGGTGCTCGAGTTGGACAGGGCCACGTTGGGCAAAACCTCGTGAGCTCCGGTTAAGTGGCACGAGAGGGACGAGTTGGTGAAATAGGAATTCATACCGtccactctcactctctctctctctctctctcactcactccaaacctctcttcttctctttccctccctctcctactttctctgatctctctctctttctccctctttctctattttactccctccctccttctttccctccctcactcacgctttctttctttcgttctttttctcagtattcctttatttcttctttttttaaatttttttttattaatcccTCTCTTTTAATGCCACTGCTGTATGATGTCTAATTTATTTCGGGACACCAATAAAAGACTGCACGCGCGCAGCTCAACGTGTTTTCAAAGCATCCTTTCTAAGATGGACAGAGATGACTGGGTCAGCTGACCACACTTCATCCAATGAAAGACTTGattatggagagagagaaagagagagagagaggaaaaaaaagaaatgaagtcGAAATTTTCGACCTTCTCTCCCATAACATCAGATTATACAGCTTTTTGAAGGTGACATAttattcagtctctctctctctctctctctctctctctctcacaccacccacccacacacacacatagatagatagatagatagatagatagatgaaaatAAAGCTATTGAATCATCTTCTACACACCTGAATGACGATCAGAAATGAAAACGCTAAAAGGTCATAATTCCATTTGAACTGAACATATTTCACAGATCATAGAAAAGTCTGTTATCTCTCTAAAAATAGAAAGATATGAAATGTGATCACACTTGATTAGGTCCAGTATTATTGGTTATTATTGCTAGTGCAGGAAATCCTTTCAAAGCGAACCATTACGAATGTGATGCATttcataaaacagtaaaatgctGAACGAAAacattgaatattttttaaaaatctttattttctgCACTTATTAATATTTCAGGACGCTGGTATCGGTCATGCTTTACTGTAGAATAATacatgctttcatttcatttcatgtttctCATATTGAAATCTGACTCAgtgttattaaatacaaatctgCATCCCTACATCAACAACTATTCGTTGTTTAATAACGGGAATGCGAAAAATAAACCtaactttttattatattttcagtggataatttacaataaaaatatacatacgtTAGATGACCATAAGCTAATGCATCTAACATCTTGTATGAGTCTGTATCGTAAAGTGTGCATGCAGTAAACCAGTAAGAACAACAGAATGGCGACTTACCGACACTCACAAGCTCATCATGGCACCACCTGAAGTCCTTTCATTCAGATATTCCGTATTTTGTAGAATCTGTTTTCACAAGAGTCAGTGCTGGAAATTCTGTACACTATAACCCCTGATCAGTAAATGAATCTAGCCtttctggtaaaaaaaaatgcaatgaagctgaggaagaagagcaggaaaaccaaaaaacagcccactttctcttcttttcttttattatttaatatcaaGCTACAATAAGAACTGCATGCTCCTCTTTTAGAGATTGAGAGTGAATCTGAGTCACCAAACCAAACGCCAACAGCATAAAGTTCATGTTCACGGAGAGCA

Function

symbol description
hoxc6 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anterior/posterior pattern specification and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within embryonic skeletal system development. Located in cytosol and nucleoplasm.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU368903 True 5790 lncRNA 0.36 2 20932678 20943629

Neighbor

gene id symbol gene type direction distance location
smug1 smug1 coding upstream 31267 20896980 ~ 20901411 (+)
slc2a10 slc2a10 coding upstream 270989 20654185 ~ 20661689 (+)
si:ch73-267c23.10 LOC108255296 coding upstream 282505 20633750 ~ 20650173 (+)
LOC113537838 NA coding upstream 311439 20618291 ~ 20621239 (+)
LOC113538122 LOC108255274 coding upstream 329614 20596752 ~ 20603064 (+)
calcoco1b LOC108255279 coding downstream 89494 21033123 ~ 21046577 (+)
LOC113537842 LOC108255161 coding downstream 169805 21113434 ~ 21135134 (+)
faim2b LOC108255062 coding downstream 194180 21137809 ~ 21149284 (+)
lrp1aa LOC108281054,LOC108424569 coding downstream 267623 21211252 ~ 21371670 (+)
alas1 alas1 coding downstream 467147 21410776 ~ 21435824 (+)
G311486 NA non-coding upstream 47837 20882446 ~ 20884841 (+)
G311489 NA non-coding upstream 89223 20842278 ~ 20843455 (+)
G311508 NA non-coding upstream 127754 20767078 ~ 20804924 (+)
G311591 hoxd9,LOC108281018,LOC106512889,LOC103134318 non-coding downstream 4692 20948321 ~ 20951538 (+)
G311599 hoxc11,LOC106565461,LOC108276183 non-coding downstream 24086 20967715 ~ 20968865 (+)
LOC113538073 NA non-coding downstream 62721 21006350 ~ 21012460 (+)
G311649 NA non-coding downstream 207169 21150798 ~ 21155101 (+)
G311652 NA non-coding downstream 215828 21159457 ~ 21164926 (+)
hnrnpa1a LOC108255131,LOC108424623,LOC107707363,LOC107551332,LOC107754559 other upstream 50313 20870652 ~ 20882365 (+)
znf740a znf740a,LOC108254942,LOC108424621,LOC107754560,LOC107551334 other upstream 71951 20807858 ~ 20860727 (+)
errfi1a errfi1 other upstream 755406 20119383 ~ 20177272 (+)
si:dkey-264d12.5 LOC108254816 other upstream 1064197 19848467 ~ 19868481 (+)
vamp3 vamp3 other upstream 1148753 19768983 ~ 19783925 (+)

Expression


Co-expression Network