G311489


Basic Information

Item Value
gene id G311489
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 20842278 ~ 20843455 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU368909
CTATGTTACAGCTTGTCAAGAACAAATtgggttttaattttttttccctccaattTTCTCCCTAACTTAGTCttggccagttcccacccaccaggCAGCTCTCCtttatcacatgacagctaccaacgaGGGTGGGCGAAGACTATCAAGTTCGTAACACACttagaggaaagcgctatctacccacTTCCACATGCagagacacccatgattggctaatgtctctgtgattgaaaagggagagagagtatgccatccctcccatccaGAGAGTGGCTGATTTTGCTCTTTTGGACTCCTGGACATGGATGGTTGTGGCATCATAGGAATTCAAACTTTCAATCTCCAGGCAAaagggcaaacacttttctgtcatGCCATCTGGAAGCCCTGGTTTCGGTCTTTTGATCAGGTCAAGAAGCCTACTTGATGTGTTATATCTTAATTGCAGATGATAAAATACTTGGATACATGGATCCATTTCGCTACCTTGAGGGAATTGTCCCTTTTGCTATAATAACTTATAGCCATATATAgagtgtgattttaaaaataaggcATGGTTTCAATACTTGGACTTACTGCTTTGTCTTCTAAATGGCTTCCTGATGCATTTGGGGACATACCCGATGCATCAAGCTTTTATGCATACCTTGGCATTGGGTTAATTCTATAGGGTCATGTAGGACTTGGGTATGGTATAGAGTCAAGTGGGGATTAGATATAGAATAGAGTCAAGTGGACTTGGGTATGGTAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU368909 True 759 lncRNA 0.42 2 20842278 20843455

Neighbor

gene id symbol gene type direction distance location
slc2a10 slc2a10 coding upstream 180589 20654185 ~ 20661689 (+)
si:ch73-267c23.10 LOC108255296 coding upstream 192105 20633750 ~ 20650173 (+)
LOC113537838 NA coding upstream 221039 20618291 ~ 20621239 (+)
LOC113538122 LOC108255274 coding upstream 239214 20596752 ~ 20603064 (+)
ankrd52b ankrd52,LOC108255001 coding upstream 265918 20546892 ~ 20576360 (+)
smug1 smug1 coding downstream 53525 20896980 ~ 20901411 (+)
calcoco1b LOC108255279 coding downstream 189668 21033123 ~ 21046577 (+)
LOC113537842 LOC108255161 coding downstream 269979 21113434 ~ 21135134 (+)
faim2b LOC108255062 coding downstream 294354 21137809 ~ 21149284 (+)
lrp1aa LOC108281054,LOC108424569 coding downstream 367797 21211252 ~ 21371670 (+)
G311508 NA non-coding upstream 37354 20767078 ~ 20804924 (+)
G311505 NA non-coding upstream 59918 20781762 ~ 20782360 (+)
G311504 LOC108255060 non-coding upstream 72450 20767626 ~ 20769828 (+)
G311506 NA non-coding upstream 151538 20685167 ~ 20690740 (+)
G311507 NA non-coding upstream 157209 20682831 ~ 20685069 (+)
G311486 NA non-coding downstream 38991 20882446 ~ 20884841 (+)
G311488 NA non-coding downstream 59857 20903312 ~ 20937881 (+)
G311482 hoxc12,hoxc12aa,hoxc12ba,LOC107578812,LOC108433365,LOC105912699,LOC105013633 non-coding downstream 83548 20927003 ~ 20983511 (+)
G311483 hoxc6ba,hoxc6,LOC108255268,LOC105016985 non-coding downstream 89223 20932678 ~ 20943629 (+)
G311591 hoxd9,LOC108281018,LOC106512889,LOC103134318 non-coding downstream 104866 20948321 ~ 20951538 (+)
errfi1a errfi1 other upstream 665006 20119383 ~ 20177272 (+)
si:dkey-264d12.5 LOC108254816 other upstream 973797 19848467 ~ 19868481 (+)
vamp3 vamp3 other upstream 1058353 19768983 ~ 19783925 (+)
phf13 phf13 other upstream 1325100 19508189 ~ 19517178 (+)
svbp NA other upstream 1343607 19494758 ~ 19498671 (+)
hnrnpa1a LOC108255131,LOC108424623,LOC107707363,LOC107551332,LOC107754559 other downstream 27197 20870652 ~ 20882365 (+)

Expression


Co-expression Network