G311504 (LOC108255060)


Basic Information

Item Value
gene id G311504
gene name LOC108255060
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 20767626 ~ 20769828 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU368924
tattaaATAATTTGGCCAGTTTAATTTGTTACTGCagaatttttcaaaaatgaagaaatagaTGTTAAGACATTAGTCCTATTATGACGGTGTTTGTTTCTagacagatttctttttttaatgaatctgGAGATTTGCGTCTCAcctggtcacatgatcatatttgtttttatttatacaatgctacagtttataatattataacttACTGTTAACCGGTAACGTCATAACAAGCGATCGATAATTGACTTTTCCTTGCTTTTCCAACAATACAGCTTCCTCagtgtttatttctaaaatattcattaagacagaacactttatattttatactataatatttataatattttattacaccTGATATTACAAGATAAGACAATACGGTATTCCACAAGGCTCTGCTTTAGGCCCGCTACTATTCTCCCTTTATATCCATGCTCTAGGACGTTTAACGGTACAATCTGCATAATATTGTATTCAAAGGCAAAATAAACTGAGGTTTTATCCCTGTAGCTCTCATTATATAACTAATTTTGTGATTGCTGGAGGTATTTAAAGGTTCTCTGGACAAATGGACCAATTACAGGGTTGTAGCAGGCAAAAgatagattaaaaacaaacccttgaaaaactaaaaaatatatataaataaaaaattaatttggttCCAGTAGGGCTGCTGAGAGAGAAATTGTGGAAGTGAAACCATGGAGTTTAAAAACcctaaacaataaaaacagcattttgttccagctctaaaaaaaacaaaacagaacaaaacaaaacagaacaaaacagaacagaacagaacagaacagaacagaacagtgGTTAAAATGGTCACATTACGAGCACcagcaataaaataatgtgcttttttttaaatccagttgGAAAtagagatgatgaagatgaaaataaaataataagaagaagaaccTCGTCACCTCAACCATTTATGGCTTTTTTCGAATTACTTTTCATTAATCTAATAACGCTGTCAGAGTCTGAGCAGATCCTGAGGGATGAGTGGTTTCAAACTTCAGCAACTTCTTCATTATCATCTTCATCTTCGTAGCATCGGTTCCTCTTGATCAGCTCCTCCACAGTGAAGgattcttctgcttcttctccgTCCCAGAAACCGACATCTTGCGACGTCCTGTTGTTCTCCGCAGCTAGGGGAGGTGATGTTTTCTTAAGTTCCAggggtttttttggtttctcCTCAGCCTCCATCTTGTCATCGAAAGCTTCACTTTTGTTTGACTGTGACCGTTTTAGGATGGATTGTGGGATTTTGGGTTTCTCCTCTTGTTTTGGAGGAACCTCCACTTCACTGCTGTTTAAAGCCTTGTGGTCTGACACGGAGGGCTTTCTCGCTTCTGAGCTCTCCTCGCCTTTCTCCTTCTGGACAATCTGTATTTTGGAAGTTGAACGAAGCTCTAGAGAGCCACGCCTCACCAAAGTGGTCTTGAGGGGGCGTGATTGGTCCTGATTGGTGGATTCCAGCCTTGGTGCCACAGAAAAAGGTCGACTTCGCTCTTTGAGAGATGCACTGCGTCTCAGATTCCTCAACTCCACTCGCTCTGTGCTCTCCAGATTGGATTGGACCTCGTCCTCTGGTGGCCATTTTAGCTTGAAGACTCTAACTGGGCTCTTTCCGCTTTCGACAGCAGAACTGGAACCTTCAGCACGTGGTGGCCAAGTGATCTTCAGTCTTCTTGTCTCCACAGAAGCTGCAGGTTTCTCCATTTCTTTAACCGGTGGCTGAGTTTTGGTCTCCAGAGATGTTGCAAGATCGGTGACTTTGGCTATTGGAGCTTCCTCAACTGTGGAATTTTGATCCAAGACTTTTCCTGAACTGGCTGGTTTAACTGGGATGGGGTCAGGTGAAGCAGATTTTGGCTTTTCAGACTCTTCGTTCTCCTCGTCGTCACCTCGGGCCGTCCACAGCTCCTTATGAGGCCTGTGTCCGAAGCCCTCGTCGTAGTTACCTTTGGACTTGAAGAGCTGGTTGAAGTGAGGTTTGCAGTAGATGCTACCGTGCAGGCAGGCGAAGTTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU368924 True 2069 lncRNA 0.41 2 20767626 20769828

Neighbor

gene id symbol gene type direction distance location
slc2a10 slc2a10 coding upstream 105937 20654185 ~ 20661689 (+)
si:ch73-267c23.10 LOC108255296 coding upstream 117453 20633750 ~ 20650173 (+)
LOC113537838 NA coding upstream 146387 20618291 ~ 20621239 (+)
LOC113538122 LOC108255274 coding upstream 164562 20596752 ~ 20603064 (+)
ankrd52b ankrd52,LOC108255001 coding upstream 191266 20546892 ~ 20576360 (+)
smug1 smug1 coding downstream 127152 20896980 ~ 20901411 (+)
calcoco1b LOC108255279 coding downstream 263295 21033123 ~ 21046577 (+)
LOC113537842 LOC108255161 coding downstream 343606 21113434 ~ 21135134 (+)
faim2b LOC108255062 coding downstream 367981 21137809 ~ 21149284 (+)
lrp1aa LOC108281054,LOC108424569 coding downstream 441424 21211252 ~ 21371670 (+)
G311506 NA non-coding upstream 76886 20685167 ~ 20690740 (+)
G311507 NA non-coding upstream 82557 20682831 ~ 20685069 (+)
G311516 NA non-coding upstream 99353 20666267 ~ 20668273 (+)
G311515 NA non-coding upstream 101881 20662768 ~ 20665745 (+)
G311444 NA non-coding upstream 184031 20579953 ~ 20583595 (+)
G311505 NA non-coding downstream 11934 20781762 ~ 20782360 (+)
G311489 NA non-coding downstream 72450 20842278 ~ 20843455 (+)
G311486 NA non-coding downstream 112618 20882446 ~ 20884841 (+)
G311488 NA non-coding downstream 133484 20903312 ~ 20937881 (+)
G311482 hoxc12,hoxc12aa,hoxc12ba,LOC107578812,LOC108433365,LOC105912699,LOC105013633 non-coding downstream 157175 20927003 ~ 20983511 (+)
errfi1a errfi1 other upstream 590354 20119383 ~ 20177272 (+)
si:dkey-264d12.5 LOC108254816 other upstream 899145 19848467 ~ 19868481 (+)
vamp3 vamp3 other upstream 983701 19768983 ~ 19783925 (+)
phf13 phf13 other upstream 1250448 19508189 ~ 19517178 (+)
svbp NA other upstream 1268955 19494758 ~ 19498671 (+)
znf740a znf740a,LOC108254942,LOC108424621,LOC107754560,LOC107551334 other downstream 38030 20807858 ~ 20860727 (+)
hnrnpa1a LOC108255131,LOC108424623,LOC107707363,LOC107551332,LOC107754559 other downstream 100824 20870652 ~ 20882365 (+)

Expression


Co-expression Network