G311508


Basic Information

Item Value
gene id G311508
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 20767078 ~ 20804924 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU368938
aatttattaaagccTTACACTTCACCAAGGTGTCTTACATTTTAAGGTAAACCTTTGTTTGGTCTCGTCATAAAGGAcagaatataaaacatttgcataaaaatccgaatcattaacattaaatgttaagACGGATCATTAAGACAAAAATCGAGAGGCACTTTGCTGGGCTTCAGACGTAAAAGACGACCAGATGATAATCCCGTTAACATGATAGCAtaattaaaagtgtgtgtgtgtgtgtgtgtgtgtatatgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU368938 True 271 lncRNA 0.35 2 20767078 20804924

Neighbor

gene id symbol gene type direction distance location
slc2a10 slc2a10 coding upstream 105389 20654185 ~ 20661689 (+)
si:ch73-267c23.10 LOC108255296 coding upstream 116905 20633750 ~ 20650173 (+)
LOC113537838 NA coding upstream 145839 20618291 ~ 20621239 (+)
LOC113538122 LOC108255274 coding upstream 164014 20596752 ~ 20603064 (+)
ankrd52b ankrd52,LOC108255001 coding upstream 190718 20546892 ~ 20576360 (+)
smug1 smug1 coding downstream 92056 20896980 ~ 20901411 (+)
calcoco1b LOC108255279 coding downstream 228199 21033123 ~ 21046577 (+)
LOC113537842 LOC108255161 coding downstream 308510 21113434 ~ 21135134 (+)
faim2b LOC108255062 coding downstream 332885 21137809 ~ 21149284 (+)
lrp1aa LOC108281054,LOC108424569 coding downstream 406328 21211252 ~ 21371670 (+)
G311506 NA non-coding upstream 76338 20685167 ~ 20690740 (+)
G311507 NA non-coding upstream 82009 20682831 ~ 20685069 (+)
G311516 NA non-coding upstream 98805 20666267 ~ 20668273 (+)
G311515 NA non-coding upstream 101333 20662768 ~ 20665745 (+)
G311444 NA non-coding upstream 183483 20579953 ~ 20583595 (+)
G311489 NA non-coding downstream 37354 20842278 ~ 20843455 (+)
G311486 NA non-coding downstream 77522 20882446 ~ 20884841 (+)
G311488 NA non-coding downstream 98388 20903312 ~ 20937881 (+)
G311482 hoxc12,hoxc12aa,hoxc12ba,LOC107578812,LOC108433365,LOC105912699,LOC105013633 non-coding downstream 122079 20927003 ~ 20983511 (+)
G311483 hoxc6ba,hoxc6,LOC108255268,LOC105016985 non-coding downstream 127754 20932678 ~ 20943629 (+)
errfi1a errfi1 other upstream 589806 20119383 ~ 20177272 (+)
si:dkey-264d12.5 LOC108254816 other upstream 898597 19848467 ~ 19868481 (+)
vamp3 vamp3 other upstream 983153 19768983 ~ 19783925 (+)
phf13 phf13 other upstream 1249900 19508189 ~ 19517178 (+)
svbp NA other upstream 1268407 19494758 ~ 19498671 (+)
znf740a znf740a,LOC108254942,LOC108424621,LOC107754560,LOC107551334 other downstream 2934 20807858 ~ 20860727 (+)
hnrnpa1a LOC108255131,LOC108424623,LOC107707363,LOC107551332,LOC107754559 other downstream 65728 20870652 ~ 20882365 (+)

Expression


Co-expression Network