Gene
RNA
| Item | Value |
|---|---|
| gene id | G311515 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047614.1 |
| NCBI id | CM018560.1 |
| chromosome length | 21552800 |
| location | 20662768 ~ 20665745 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU368953 | True | 522 | lncRNA | 0.38 | 2 | 20662768 | 20665745 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| slc2a10 | slc2a10 | coding | upstream | 1079 | 20654185 ~ 20661689 (+) |
| si:ch73-267c23.10 | LOC108255296 | coding | upstream | 12595 | 20633750 ~ 20650173 (+) |
| LOC113537838 | NA | coding | upstream | 41529 | 20618291 ~ 20621239 (+) |
| LOC113538122 | LOC108255274 | coding | upstream | 59704 | 20596752 ~ 20603064 (+) |
| ankrd52b | ankrd52,LOC108255001 | coding | upstream | 86408 | 20546892 ~ 20576360 (+) |
| smug1 | smug1 | coding | downstream | 231235 | 20896980 ~ 20901411 (+) |
| calcoco1b | LOC108255279 | coding | downstream | 367378 | 21033123 ~ 21046577 (+) |
| LOC113537842 | LOC108255161 | coding | downstream | 447689 | 21113434 ~ 21135134 (+) |
| faim2b | LOC108255062 | coding | downstream | 472064 | 21137809 ~ 21149284 (+) |
| lrp1aa | LOC108281054,LOC108424569 | coding | downstream | 545507 | 21211252 ~ 21371670 (+) |
| G311444 | NA | non-coding | upstream | 79173 | 20579953 ~ 20583595 (+) |
| G311460 | NA | non-coding | upstream | 118215 | 20544021 ~ 20544553 (+) |
| G311471 | NA | non-coding | upstream | 140960 | 20519861 ~ 20521808 (+) |
| G311446 | NA | non-coding | upstream | 187081 | 20473896 ~ 20475687 (+) |
| G311447 | NA | non-coding | upstream | 188971 | 20472823 ~ 20473797 (+) |
| G311516 | NA | non-coding | downstream | 522 | 20666267 ~ 20668273 (+) |
| G311507 | NA | non-coding | downstream | 17086 | 20682831 ~ 20685069 (+) |
| G311506 | NA | non-coding | downstream | 19422 | 20685167 ~ 20690740 (+) |
| G311508 | NA | non-coding | downstream | 101333 | 20767078 ~ 20804924 (+) |
| G311504 | LOC108255060 | non-coding | downstream | 101881 | 20767626 ~ 20769828 (+) |
| errfi1a | errfi1 | other | upstream | 485496 | 20119383 ~ 20177272 (+) |
| si:dkey-264d12.5 | LOC108254816 | other | upstream | 794287 | 19848467 ~ 19868481 (+) |
| vamp3 | vamp3 | other | upstream | 878843 | 19768983 ~ 19783925 (+) |
| phf13 | phf13 | other | upstream | 1145590 | 19508189 ~ 19517178 (+) |
| svbp | NA | other | upstream | 1164097 | 19494758 ~ 19498671 (+) |
| znf740a | znf740a,LOC108254942,LOC108424621,LOC107754560,LOC107551334 | other | downstream | 142113 | 20807858 ~ 20860727 (+) |
| hnrnpa1a | LOC108255131,LOC108424623,LOC107707363,LOC107551332,LOC107754559 | other | downstream | 204907 | 20870652 ~ 20882365 (+) |
