Gene
RNA
| Item | Value |
|---|---|
| gene id | G311516 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047614.1 |
| NCBI id | CM018560.1 |
| chromosome length | 21552800 |
| location | 20666267 ~ 20668273 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU368955 | True | 822 | lncRNA | 0.45 | 2 | 20666267 | 20668273 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| slc2a10 | slc2a10 | coding | upstream | 4578 | 20654185 ~ 20661689 (+) |
| si:ch73-267c23.10 | LOC108255296 | coding | upstream | 16094 | 20633750 ~ 20650173 (+) |
| LOC113537838 | NA | coding | upstream | 45028 | 20618291 ~ 20621239 (+) |
| LOC113538122 | LOC108255274 | coding | upstream | 63203 | 20596752 ~ 20603064 (+) |
| ankrd52b | ankrd52,LOC108255001 | coding | upstream | 89907 | 20546892 ~ 20576360 (+) |
| smug1 | smug1 | coding | downstream | 228707 | 20896980 ~ 20901411 (+) |
| calcoco1b | LOC108255279 | coding | downstream | 364850 | 21033123 ~ 21046577 (+) |
| LOC113537842 | LOC108255161 | coding | downstream | 445161 | 21113434 ~ 21135134 (+) |
| faim2b | LOC108255062 | coding | downstream | 469536 | 21137809 ~ 21149284 (+) |
| lrp1aa | LOC108281054,LOC108424569 | coding | downstream | 542979 | 21211252 ~ 21371670 (+) |
| G311515 | NA | non-coding | upstream | 522 | 20662768 ~ 20665745 (+) |
| G311444 | NA | non-coding | upstream | 82672 | 20579953 ~ 20583595 (+) |
| G311460 | NA | non-coding | upstream | 121714 | 20544021 ~ 20544553 (+) |
| G311471 | NA | non-coding | upstream | 144459 | 20519861 ~ 20521808 (+) |
| G311446 | NA | non-coding | upstream | 190580 | 20473896 ~ 20475687 (+) |
| G311507 | NA | non-coding | downstream | 14558 | 20682831 ~ 20685069 (+) |
| G311506 | NA | non-coding | downstream | 16894 | 20685167 ~ 20690740 (+) |
| G311508 | NA | non-coding | downstream | 98805 | 20767078 ~ 20804924 (+) |
| G311504 | LOC108255060 | non-coding | downstream | 99353 | 20767626 ~ 20769828 (+) |
| G311505 | NA | non-coding | downstream | 113489 | 20781762 ~ 20782360 (+) |
| errfi1a | errfi1 | other | upstream | 488995 | 20119383 ~ 20177272 (+) |
| si:dkey-264d12.5 | LOC108254816 | other | upstream | 797786 | 19848467 ~ 19868481 (+) |
| vamp3 | vamp3 | other | upstream | 882342 | 19768983 ~ 19783925 (+) |
| phf13 | phf13 | other | upstream | 1149089 | 19508189 ~ 19517178 (+) |
| svbp | NA | other | upstream | 1167596 | 19494758 ~ 19498671 (+) |
| znf740a | znf740a,LOC108254942,LOC108424621,LOC107754560,LOC107551334 | other | downstream | 139585 | 20807858 ~ 20860727 (+) |
| hnrnpa1a | LOC108255131,LOC108424623,LOC107707363,LOC107551332,LOC107754559 | other | downstream | 202379 | 20870652 ~ 20882365 (+) |
