Gene
RNA
| Item | Value |
|---|---|
| gene id | G311591 |
| gene name | hoxd9,LOC108281018,LOC106512889,LOC103134318 |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047614.1 |
| NCBI id | CM018560.1 |
| chromosome length | 21552800 |
| location | 20948321 ~ 20951538 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| symbol | description |
|---|---|
| hoxd9 | Enables DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in negative regulation of transcription by RNA polymerase II. Located in nucleolus and nucleoplasm. |
| description |
|---|
| unnamed protein product, partial |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU369035 | True | 1198 | lncRNA | 0.38 | 2 | 20948321 | 20951538 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| smug1 | smug1 | coding | upstream | 46910 | 20896980 ~ 20901411 (+) |
| slc2a10 | slc2a10 | coding | upstream | 286632 | 20654185 ~ 20661689 (+) |
| si:ch73-267c23.10 | LOC108255296 | coding | upstream | 298148 | 20633750 ~ 20650173 (+) |
| LOC113537838 | NA | coding | upstream | 327082 | 20618291 ~ 20621239 (+) |
| LOC113538122 | LOC108255274 | coding | upstream | 345257 | 20596752 ~ 20603064 (+) |
| calcoco1b | LOC108255279 | coding | downstream | 81585 | 21033123 ~ 21046577 (+) |
| LOC113537842 | LOC108255161 | coding | downstream | 161896 | 21113434 ~ 21135134 (+) |
| faim2b | LOC108255062 | coding | downstream | 186271 | 21137809 ~ 21149284 (+) |
| lrp1aa | LOC108281054,LOC108424569 | coding | downstream | 259714 | 21211252 ~ 21371670 (+) |
| alas1 | alas1 | coding | downstream | 459238 | 21410776 ~ 21435824 (+) |
| G311483 | hoxc6ba,hoxc6,LOC108255268,LOC105016985 | non-coding | upstream | 4692 | 20932678 ~ 20943629 (+) |
| G311488 | NA | non-coding | upstream | 10440 | 20903312 ~ 20937881 (+) |
| G311486 | NA | non-coding | upstream | 63480 | 20882446 ~ 20884841 (+) |
| G311489 | NA | non-coding | upstream | 104866 | 20842278 ~ 20843455 (+) |
| G311508 | NA | non-coding | upstream | 143397 | 20767078 ~ 20804924 (+) |
| G311599 | hoxc11,LOC106565461,LOC108276183 | non-coding | downstream | 16177 | 20967715 ~ 20968865 (+) |
| LOC113538073 | NA | non-coding | downstream | 54812 | 21006350 ~ 21012460 (+) |
| G311649 | NA | non-coding | downstream | 199260 | 21150798 ~ 21155101 (+) |
| G311652 | NA | non-coding | downstream | 207919 | 21159457 ~ 21164926 (+) |
| G311653 | NA | non-coding | downstream | 210380 | 21161918 ~ 21164080 (+) |
| hnrnpa1a | LOC108255131,LOC108424623,LOC107707363,LOC107551332,LOC107754559 | other | upstream | 65956 | 20870652 ~ 20882365 (+) |
| znf740a | znf740a,LOC108254942,LOC108424621,LOC107754560,LOC107551334 | other | upstream | 87594 | 20807858 ~ 20860727 (+) |
| errfi1a | errfi1 | other | upstream | 771049 | 20119383 ~ 20177272 (+) |
| si:dkey-264d12.5 | LOC108254816 | other | upstream | 1079840 | 19848467 ~ 19868481 (+) |
| vamp3 | vamp3 | other | upstream | 1164396 | 19768983 ~ 19783925 (+) |
