G311653


Basic Information

Item Value
gene id G311653
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 21161918 ~ 21164080 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU369116
CTACactgtactatagactgtggaatatataccgcgCGTCACGCTACactgtactatagactgtggaatatataccgCGTTACGCTACgctgtactatagactgtggaatatataccgcgCGTTACGCTACgctgtactatagactgtggaatatataccgcgTTACGCTACgctgtactatagactgtggaatatataccgCGTTACGCTACgctgtactatagactgtggaatatataccgcgTTACGCTACGCcgtactatagactgtggaatatataccgcgTTACGCTACgctgtactatagactgtggaatatataccgcgCGTTACGCTACgctgtactatagactgtggaatatataccgcgCGTTACGCTACgctgtactatagactgtggaatatataccgcgCGTTACGCTACactgtactatagactgtggaatatataccgcgCGTTACGCTACactgtactatagactgtggaatatataccgcgCGTTACGCTAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU369116 True 510 lncRNA 0.45 3 21161918 21164080

Neighbor

gene id symbol gene type direction distance location
faim2b LOC108255062 coding upstream 12634 21137809 ~ 21149284 (+)
LOC113537842 LOC108255161 coding upstream 26784 21113434 ~ 21135134 (+)
calcoco1b LOC108255279 coding upstream 115341 21033123 ~ 21046577 (+)
smug1 smug1 coding upstream 260507 20896980 ~ 20901411 (+)
slc2a10 slc2a10 coding upstream 500229 20654185 ~ 20661689 (+)
lrp1aa LOC108281054,LOC108424569 coding downstream 47172 21211252 ~ 21371670 (+)
alas1 alas1 coding downstream 246696 21410776 ~ 21435824 (+)
poc1a poc1a,LOC107747840 coding downstream 279219 21443299 ~ 21483333 (+)
dusp7 dusp7,LOC107697567,LOC107677944 coding downstream 327810 21491890 ~ 21510998 (+)
rpl29 NA coding downstream 378674 21542754 ~ 21545334 (+)
G311649 NA non-coding upstream 6817 21150798 ~ 21155101 (+)
LOC113538073 NA non-coding upstream 149458 21006350 ~ 21012460 (+)
G311599 hoxc11,LOC106565461,LOC108276183 non-coding upstream 193053 20967715 ~ 20968865 (+)
G311591 hoxd9,LOC108281018,LOC106512889,LOC103134318 non-coding upstream 210380 20948321 ~ 20951538 (+)
G311483 hoxc6ba,hoxc6,LOC108255268,LOC105016985 non-coding upstream 218289 20932678 ~ 20943629 (+)
LOC117599907 NA non-coding downstream 2900 21166980 ~ 21185039 (+)
G311665 NA non-coding downstream 27088 21191168 ~ 21191629 (+)
G311946 NA non-coding downstream 213780 21377860 ~ 21391093 (+)
G311972 NA non-coding downstream 320459 21484539 ~ 21484817 (+)
G311977 NA non-coding downstream 350391 21514471 ~ 21523897 (+)
hnrnpa1a LOC108255131,LOC108424623,LOC107707363,LOC107551332,LOC107754559 other upstream 279553 20870652 ~ 20882365 (+)
znf740a znf740a,LOC108254942,LOC108424621,LOC107754560,LOC107551334 other upstream 301191 20807858 ~ 20860727 (+)
errfi1a errfi1 other upstream 984646 20119383 ~ 20177272 (+)
si:dkey-264d12.5 LOC108254816 other upstream 1293437 19848467 ~ 19868481 (+)
vamp3 vamp3 other upstream 1377993 19768983 ~ 19783925 (+)

Expression


Co-expression Network