Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC117599907 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047614.1 |
| NCBI id | CM018560.1 |
| chromosome length | 21552800 |
| location | 21166980 ~ 21185039 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU369118 | True | 485 | lncRNA | 0.49 | 3 | 21166980 | 21185039 |
| XR_004580235.1 | False | 374 | lncRNA | 0.49 | 3 | 21167086 | 21185034 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| faim2b | LOC108255062 | coding | upstream | 17696 | 21137809 ~ 21149284 (+) |
| LOC113537842 | LOC108255161 | coding | upstream | 31846 | 21113434 ~ 21135134 (+) |
| calcoco1b | LOC108255279 | coding | upstream | 120403 | 21033123 ~ 21046577 (+) |
| smug1 | smug1 | coding | upstream | 265569 | 20896980 ~ 20901411 (+) |
| slc2a10 | slc2a10 | coding | upstream | 505291 | 20654185 ~ 20661689 (+) |
| lrp1aa | LOC108281054,LOC108424569 | coding | downstream | 26213 | 21211252 ~ 21371670 (+) |
| alas1 | alas1 | coding | downstream | 225737 | 21410776 ~ 21435824 (+) |
| poc1a | poc1a,LOC107747840 | coding | downstream | 258260 | 21443299 ~ 21483333 (+) |
| dusp7 | dusp7,LOC107697567,LOC107677944 | coding | downstream | 306851 | 21491890 ~ 21510998 (+) |
| rpl29 | NA | coding | downstream | 357715 | 21542754 ~ 21545334 (+) |
| G311652 | NA | non-coding | upstream | 2054 | 21159457 ~ 21164926 (+) |
| G311653 | NA | non-coding | upstream | 2900 | 21161918 ~ 21164080 (+) |
| G311649 | NA | non-coding | upstream | 11879 | 21150798 ~ 21155101 (+) |
| LOC113538073 | NA | non-coding | upstream | 154520 | 21006350 ~ 21012460 (+) |
| G311599 | hoxc11,LOC106565461,LOC108276183 | non-coding | upstream | 198115 | 20967715 ~ 20968865 (+) |
| G311665 | NA | non-coding | downstream | 6129 | 21191168 ~ 21191629 (+) |
| G311946 | NA | non-coding | downstream | 192821 | 21377860 ~ 21391093 (+) |
| G311972 | NA | non-coding | downstream | 299500 | 21484539 ~ 21484817 (+) |
| G311977 | NA | non-coding | downstream | 329432 | 21514471 ~ 21523897 (+) |
| hnrnpa1a | LOC108255131,LOC108424623,LOC107707363,LOC107551332,LOC107754559 | other | upstream | 284615 | 20870652 ~ 20882365 (+) |
| znf740a | znf740a,LOC108254942,LOC108424621,LOC107754560,LOC107551334 | other | upstream | 306253 | 20807858 ~ 20860727 (+) |
| errfi1a | errfi1 | other | upstream | 989708 | 20119383 ~ 20177272 (+) |
| si:dkey-264d12.5 | LOC108254816 | other | upstream | 1298499 | 19848467 ~ 19868481 (+) |
| vamp3 | vamp3 | other | upstream | 1383055 | 19768983 ~ 19783925 (+) |
