ndufaf3 (ndufaf3)


Basic Information

Item Value
gene id ndufaf3
gene name ndufaf3
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 951543 ~ 967971 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026912402.2
AGCGCGGTAATGTGTCCCCCGTGAGCCGCCGCGCTGCCGGTGACTGTGAGCTCTGTCCGCGATGGCGGCGccggtgtgtgtgagattatttCTCCCCGGATCTCACTGCTGCTTTCGGTTATGTTCGACATCTCTCCGGAGAATCACGAgTCCGGTTCTGACCCGCAGTCACAGGCTCGGCCCGACGGATGATGAGATGTACCAGCGCACCACGGTGACGGTGATGCGGAAGGAGCCCGGCAGCGGTCCCATCATCTACAGCTACAGCTCACGGGGCTTCAACATCGACGGGAACAAGGTGATCGGACCCTGCGCCGTCGTCCCTCCGGCTATTCTACAGTGGAACGTGGGAAGTCATGAAGACATAACGGTGGAGAGTTTGTCTCTGTTCTACCTGCTGGAGCCGCGCATAGaggtGTTGGTTCTGGGTACAGGAGCCCGTACAGAGCGTTTGGACCCCAACGTTCTCTCCTTCATCAGGAAGAAAGGCATTGCAGTGGAGGTGCAGGACACGCCGAACGCCTGCGCCACCTTCAACTTCCTGACCAGCGAGAGACGGATCACAGCAGCCGCTTTGATCCCGCCCCCTCCGCCGACTGCGGCGACATCAGAgtgacatcagtgtgtgtgtgtgtgtgtgtgctactgtaatactgtgtataataaatgtgtttttgaata
>XM_034314259.1
AGCGCGGTAATGTGTCCCCCGTGAGCCGCCGCGCTGCCGGTGACTGTGAGCTCTGTCCGCGATGGCGGCGccggtgtgtgtgagattatttCTCCCCGGATCTCACTGCTGCTTTCGGTTATGTTCGACATCTCTCCGGAGAATCACGAgTCCGGTTCTGACCCGCAGTCACAGGCTCGGCCCGACGGATGATGAGATGTACCAGCGCACCACGGTGACGGTGATGCGGAAGGAGCCCGGCAGCGGTCCCATCATCTACAGCTACAGCTCACGGGGCTTCAACATCGACGGGAACAAGGTGATCGGACCCTGCGCCGTCGTCCCTCCGGCTATTCTACAGTGGAACGTGGGAAGTCATGAAGACATAACGGTGGAGAGTTTGTCTCTGTTCTACCTGCTGGAGCCGCGCATAGaggtGTTGGTTCTGGGTACAGGAGCCCGTACAGAGCGTTTGGACCCCAACGTTCTCTCCTTCATCAGGAAGAAAGGCATTGCAGTGGAGGTGCAGGACACGCCGAACGCCTGCGCCACCTTCAACTTCCTGACCAGCGAGAGACGGATCACAGCAGCCGCTTTGATCCCGCCCCCTCCGCCGACTGCGGCGACATCAGAgtgacatcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
>XM_034314261.1
AGCGCGGTAATGTGTCCCCCGTGAGCCGCCGCGCTGCCGGTGACTGTGAGCTCTGTCCGCGATGGCGGCGccggtgtgtgtgagattatttCTCCCCGGATCTCACTGCTGCTTTCGGTTATGTTCGACATCTCTCCGGAGAATCACGAgTCCGGTTCTGACCCGCAGTCACAGGCTCGGCCCGACGGATGATGAGATGTACCAGCGCACCACGGTGACGGTGATGCGGAAGGAGCCCGGCAGCGGTCCCATCATCTACAGCTACAGCTCACGGGGCTTCAACATCGACGGGAACAAGGTGATCGGACCCTGCGCCGTCGTCCCTCCGGCTATTCTACAGTGGAACGTGGGAAGTCATGAAGACATAACGGTGGAGAGTTTGTCTCTGTTCTACCTGCTGGAGCCGCGCATAGaggtGTTGGTTCTGGGTACAGGAGCCCGTACAGAGCGTTTGGACCCCAACGTTCTCTCCTTCATCAGGAAGAAAGGCATTGCAGTGGAGGTGCAGGACACGCCGAACGCCTGCGCCACCTTCAACTTCCTGACCAGCGAGAGACGGATCACAGCAGCCGCTTTGATCCCGCCCCCTCCGCCGACTGCGGCGACATCAGAgtgacatcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
>XM_034314262.1
AGCGCGGTAATGTGTCCCCCGTGAGCCGCCGCGCTGCCGGTGACTGTGAGCTCTGTCCGCGATGGCGGCGccggtgtgtgtgagattatttCTCCCCGGATCTCACTGCTGCTTTCGGTTATGTTCGACATCTCTCCGGAGAATCACGAgTCCGGTTCTGACCCGCAGTCACAGGCTCGGCCCGACGGATGATGAGATGTACCAGCGCACCACGGTGACGGTGATGCGGAAGGAGCCCGGCAGCGGTCCCATCATCTACAGCTACAGCTCACGGGGCTTCAACATCGACGGGAACAAGGTGATCGGACCCTGCGCCGTCGTCCCTCCGGCTATTCTACAGTGGAACGTGGGAAGTCATGAAGACATAACGGTGGAGAGTTTGTCTCTGTTCTACCTGCTGGAGCCGCGCATAGaggtGTTGGTTCTGGGTACAGGAGCCCGTACAGAGCGTTTGGACCCCAACGTTCTCTCCTTCATCAGGAAGAAAGGCATTGCAGTGGAGGTGCAGGACACGCCGAACGCCTGCGCCACCTTCAACTTCCTGACCAGCGAGAGACGGATCACAGCAGCCGCTTTGATCCCGCCCCCTCCGCCGACTGCGGCGACATCAGAgtgacatcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

symbol description
ndufaf3 Predicted to be involved in mitochondrial respiratory chain complex I assembly. Predicted to be located in membrane; mitochondrion; and nucleus. Predicted to be active in mitochondrial inner membrane. Human ortholog(s) of this gene implicated in nuclear type mitochondrial complex I deficiency 18. Orthologous to human NDUFAF3 (NADH:ubiquinone oxidoreductase complex assembly factor 3).

NR:

description
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3

GO: NA

KEGG:

id description
K09008 NDUFAF3; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026912402.2 True 681 mRNA 0.58 5 951543 953535
XM_034314259.1 False 657 mRNA 0.59 6 951543 967971
XM_034314261.1 False 657 mRNA 0.59 6 951543 962306
XM_034314262.1 False 655 mRNA 0.59 6 951543 954334

Neighbor

gene id symbol gene type direction distance location
si:ch1073-335m2.2 LOC108254705,LOC107737932 coding upstream 24984 906429 ~ 926559 (+)
fblim1 fblim1,LOC107719030,LOC100709954 coding upstream 48962 888372 ~ 902581 (+)
LOC113539452 NA coding upstream 63193 884715 ~ 888350 (+)
slc25a34 slc25a34,LOC102777532 coding upstream 67997 875393 ~ 883546 (+)
sdhb sdhb,LOC107656920,LOC105905141,LOC104949017,LOC100705239 coding upstream 158490 786355 ~ 793053 (+)
LOC113539454 LOC108254709 coding downstream 17359 985330 ~ 986510 (+)
LOC113539455 LOC108444095 coding downstream 40878 1008849 ~ 1083835 (+)
LOC113539532 wu:fd14a01,LOC108444093,LOC108444092,LOC108254796,LOC108443910,LOC108443907 coding downstream 120882 1088853 ~ 1098976 (+)
LOC113539531 wu:fd14a01,LOC108444093,LOC108444092,LOC108254796,LOC108443910,LOC108443907 coding downstream 134855 1102826 ~ 1112909 (+)
LOC117595666 LOC108444092,LOC108444093,LOC108254796,LOC108443907 coding downstream 149879 1117850 ~ 1129548 (+)
G299659 nckipsd non-coding upstream 8017 941836 ~ 943526 (+)
G299719 NA non-coding upstream 78070 873235 ~ 873473 (+)
G299695 NA non-coding upstream 103821 845468 ~ 847722 (+)
G299708 NA non-coding upstream 112628 838363 ~ 838915 (+)
G299679 NA non-coding upstream 142193 808159 ~ 809350 (+)
G299773 hyal2 non-coding downstream 287095 1255066 ~ 1298909 (+)
G299787 NA non-coding downstream 304176 1272147 ~ 1272673 (+)
G299786 NA non-coding downstream 310877 1278848 ~ 1301404 (+)
G299833 rad54l2 non-coding downstream 388351 1356322 ~ 1356838 (+)
G299851 NA non-coding downstream 440531 1408502 ~ 1437257 (+)
fbxo42 fbxo42,LOC107719051,LOC107656898 other upstream 78787 863258 ~ 872756 (+)
LOC113539702 LOC108281106 other upstream 106673 842853 ~ 844870 (+)
mfap2 mfap2 other upstream 146445 758509 ~ 805098 (+)
LOC117599902 NA other upstream 224621 678917 ~ 726922 (+)
cdkn1a cdkn1a other upstream 430600 515540 ~ 520943 (+)
erc2 erc2,LOC107582387,LOC108414413,LOC107694874,LOC107699320 other downstream 480471 1448442 ~ 1494645 (+)
LOC117599925 NA other downstream 528889 1496860 ~ 1499172 (+)
mon1a mon1a other downstream 1085112 2053083 ~ 2060641 (+)
camkvb camkv,LOC108414427,LOC107718199,LOC107685970,LOC107715795,LOC107659532,LOC107576418 other downstream 1173551 2141522 ~ 2188917 (+)
LOC113539549 LOC108254930 other downstream 1747691 2715662 ~ 2723581 (+)

Expression


Co-expression Network