nab2 (LOC108255101,LOC108431520)


Basic Information

Item Value
gene id nab2
gene name LOC108255101,LOC108431520
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 20495896 ~ 20507184 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932419.2
AGAGGAAAGCTCTTTTTCGGTCAGATGGCGTGCCGCAGTCCGCCCCCACATTTCTCTCGCCCACACCAGCAGCAAAAAGACTCTCATTAACAACCCAGATCCTGCCAGCAAAAAGCAGCCAGGCAGGGACTCGGACGCTCCGAGACGAGCACTCCTCATTCTCATTGTTTACCTTAAAGTGgatttctataaatataaatatgctcGACTAGCGCTAGATAGTGCACATGATTCCGGAGAACTGATTCTACACTTGATTGCGGAGAATTAAGGCAGACTGCGCGTGTATCGAGGCGAGACTTGGTCTGGACGCAGACATGAAGCGTCGCGGTTTTATTCTGTAAGCACACAGACAGCCCCAGCCTGCTGAGAGAGGAACAAATCACCACCAGAGAAAGAAACTAAAAACAGGgcgaggagaggagaggagagaagagagagaggagaggagaggagaggagagaggagaggagagggaggaaaaaaaaataaatccagtttCCAGATCCCAGGGTTCGCCTGATCCGAATCCTGAGTCGGTTCTTTTGGTTGTACCATAGCAGCAGGAGGATGTCGGTGCCGCGGACGCTGGGTGAGCTGCAGCTGTACCGTGTGCTGCAGAGGGCCAACCTGCTCATGTACTACGACACCTTCATCCAGCAGGGCGGCGACGATGTGCAGCAGCTGTGTGAGGCCGGAGAAGAGGAATTCCTCGAGATCATGGCTCTGGTCGGGATGGCCACGAAGCCCCTGCACGTGCGCCGCTTGCAGAAAGCCCTGCGCGACTGGGCCGCTAATCCCGCCGTCTTCAACCAACCCCTGACCACGGCCATGGGAGGAATCCCGCTTTTTAAAATCGATAGCACCATGGGCCCGAGGAAATCCTTAAGCAACGGGCAGCCAGCATCCCCATGCGACAGGGAAGATCAGGGAGCTTGTCTGACTCCGCTCCGAGATAACGGCAGTCCGAGGAGCCCGTGCTCCCAGGCATCGCCGCTTCCTCCAGATCATCATCTTTACAGGGACAAACTGTCCCCCATGGAGCCTCACTGGCTCAGTCCGGAATTAGACGGGAACGGAGCAGAGGAAGACCAGCCCAGTCCGCCTTTGCCTCTTTTGGTCCACTCCAGGAACACAGGTCCCTCGACGCCTCCCACAtcttcctcctcgtcctcctccccTTGGCCTGGAGGACAGCTGGATGCAGACACGGTGAAGGCGGTAGGGGAAAGCGTGGAGCGTCTGTTCAGGACGGTGCCGCACACAGACCCGGCCGAGGTGAAGAGTCTCCTCAGGCTGAATAAGAAGATGGCCAAGACGGTGGGTCACATTTTCAACATGGAGCCACACGACAAGAGCAAAGAGGAGGAGATCCGCAAATACAGCCTCATCTACGGCCGCTTCGACTCCAAGAGGAGGGAGGGCAAGCAGCTGACACACCACGAGATGATCATCAACGAAGCGGCGGCGCAGTTCTGCATACGCGACAACGCGCTGTTATTGAGACGGGTGGAGCTTTTCTCACTGGCGCGTCAGGTGGCGAGGGAATGTGCCTACACCTCCACGCTGAAACACAGCAGGACCAGCTCTGAGGACTGTACCAATTCCTTTACAGACAACAGCGTTCCGAAAAGAATCAAACTCGAGGTCACAGATTCAGACAGTATCAACCTGGTACGCGGATCGAAAAGCGCTGACGCGGCGATTCACGGCAGCCTCAGGTCGGCGGCAGACGACGACAGCCTGTCAGGAGAAAGTCTGGACAGTTTATCTCACGATGTAGGGCCTCACTCTCTCCCCTCGTCATCCCCCCGTCCCCTCGCCGACACCATCGGCCCCGTCACCTGGAGTCGCCAGCTCATGCAGCAAACGCTCATGGACGAGGGCCTGCGATTGGCTAGAATGGTGTCACGTGACCACACGGCCAAGGTCAGCCTAGGGTCAGAGAAGAGACAGACTTCAGAGCCGGAGGGCCGAGCATCAGACAGACGAGGCTTAAACGCGTCCCACCAGAGCAGCAGCCCTGCCAGCACCAAAGACGACCCTTAAAGGGACACCAGCAGGAGCCAGAAGTTGCCTTGCTGCTCAACTCAGGTCTCATACGACTCGAACCCTCCGGAGATTTTCACACCTGCTTTCCCAAAACTGTCTCATGTAGTTAGCACCTCACAGGTCCAGTGTTAGACTGTTCTTCTATTGTGAGTCAGTGGCTGGATGAAGATGTGTGTTGTAGATCAGATTTGGTTGGGAATGGTCCGAGTTCAGTACAGTTCAGTGAATTCCCAGGTCACTGAGGGGGAGTGTCTCAATACAGGATTAATGATCTGATGTATGATAgacacatttaatcatttaatcacatttccatcGTTACATACAATACAACTTAGAGCTGTTCTGCTGCAATACAATGCACTGCAATACAGTAATTATGTAaagcagcacaaacacacacacacacacacacacaaattaatacTAATGAAATAATGCAGCAATACATTTGACTGCTCttaggcacagaggccacaccgaTTTTTACTGGTCAAGCCTCCTGCTTTTAGACTAaaaagcacagaggccacgcctcctttcattggactgacaggcacagaggccacgcctcctttcatTGGACTGactggcacagaggccacgcctcctttcatTGGACTGa
>XM_026932420.2
AGAGGAAAGCTCTTTTTCGGTCAGATGGCGTGCCGCAGTCCGCCCCCACATTTCTCTCGCCCACACCAGCAGCAAAAAGACTCTCATTAACAACCCAGATCCTGCCAGCAAAAAGCAGCCAGGCAGGGACTCGGACGCTCCGAGACGAGCACTCCTCATTCTCATTGTTTACCTTAAAGTGgatttctataaatataaatatgctcGACTAGCGCTAGATAGTGCACATGATTCCGGAGAACTGATTCTACACTTGATTGCGGAGAATTAAGGCAGACTGCGCGTGTATCGAGGCGAGACTTGGTCTGGACGCAGACATGAAGCGTCGCGGTTTTATTCTGTAAGCACACAGACAGCCCCAGCCTGCTGAGAGAGGAACAAATCACCACCAGAGAAAGAAACTAAAAACAGGgcgaggagaggagaggagagaagagagagaggagaggagaggagaggagagaggagaggagagggaggaaaaaaaaataaatccagtttCCAGATCCCAGGGTTCGCCTGATCCGAATCCTGAGTCGGTTCTTTTGGTTGTACCATAGCAGCAGGAGGATGTCGGTGCCGCGGACGCTGGGTGAGCTGCAGCTGTACCGTGTGCTGCAGAGGGCCAACCTGCTCATGTACTACGACACCTTCATCCAGCAGGGCGGCGACGATGTGCAGCAGCTGTGTGAGGCCGGAGAAGAGGAATTCCTCGAGATCATGGCTCTGGTCGGGATGGCCACGAAGCCCCTGCACGTGCGCCGCTTGCAGAAAGCCCTGCGCGACTGGGCCGCTAATCCCGCCGTCTTCAACCAACCCCTGACCACGGCCATGGGAGGAATCCCGCTTTTTAAAATCGATAGCACCATGGGCCCGAGGAAATCCTTAAGCAACGGGCAGCCAGCATCCCCATGCGACAGGGAAGATCAGGGAGCTTGTCTGACTCCGCTCCGAGATAACGGCAGTCCGAGGAGCCCGTGCTCCCAGGCATCGCCGCTTCCTCCAGATCATCATCTTTACAGGGACAAACTGTCCCCCATGGAGCCTCACTGGCTCAGTCCGGAATTAGACGGGAACGGAGCAGAGGAAGACCAGCCCAGTCCGCCTTTGCCTCTTTTGGTCCACTCCAGGAACACAGGTCCCTCGACGCCTCCCACAtcttcctcctcgtcctcctccccTTGGCCTGGAGGACAGCTGGATGCAGACACGGTGAAGGCGGTAGGGGAAAGCGTGGAGCGTCTGTTCAGGACGGTGCCGCACACAGACCCGGCCGAGGTGAAGAGTCTCCTCAGGCTGAATAAGAAGATGGCCAAGACGGTGGGTCACATTTTCAACATGGAGCCACACGACAAGAGCAAAGAGGAGGAGATCCGCAAATACAGCCTCATCTACGGCCGCTTCGACTCCAAGAGGAGGGAGGGCAAGCAGCTGACACACCACGAGATGATCATCAACGAAGCGGCGGCGCAGTTCTGCATACGCGACAACGCGCTGTTATTGAGACGGGTGGAGCTTTTCTCACTGGCGCGTCAGGTGGCGAGGGAATGTGCCTACACCTCCACGCTGAAACACAGCAGGACCAGCTCTGAGGACTGTACCAATTCCTTTACAGACAACAGCGTTCCGAAAAGAATCAAACTCGAGGTCACAGATTCAGACAGTATCAACCTGGTACGCGGATCGAAAAGCGCTGACGCGGCGATTCACGGCAGCCTCAGGTCGGCGGCAGACGACGACAGCCTGTCAGGAGAAAGTCTGGACAGTTTATCTCACGAGCCGGAGGGCCGAGCATCAGACAGACGAGGCTTAAACGCGTCCCACCAGAGCAGCAGCCCTGCCAGCACCAAAGACGACCCTTAAAGGGACACCAGCAGGAGCCAGAAGTTGCCTTGCTGCTCAACTCAGGTCTCATACGACTCGAACCCTCCGGAGATTTTCACACCTGCTTTCCCAAAACTGTCTCATGTAGTTAGCACCTCACAGGTCCAGTGTTAGACTGTTCTTCTATTGTGAGTCAGTGGCTGGATGAAGATGTGTGTTGTAGATCAGATTTGGTTGGGAATGGTCCGAGTTCAGTACAGTTCAGTGAATTCCCAGGTCACTGAGGGGGAGTGTCTCAATACAGGATTAATGATCTGATGTATGATAgacacatttaatcatttaatcacatttccatcGTTACATACAATACAACTTAGAGCTGTTCTGCTGCAATACAATGCACTGCAATACAGTAATTATGTAaagcagcacaaacacacacacacacacacacacaaattaatacTAATGAAATAATGCAGCAATACATTTGACTGCTCttaggcacagaggccacaccgaTTTTTACTGGTCAAGCCTCCTGCTTTTAGACTAaaaagcacagaggccacgcctcctttcattggactgacaggcacagaggccacgcctcctttcatTGGACTGactggcacagaggccacgcctcctttcatTGGACTGa

Function

NR:

description
PREDICTED: NGFI-A-binding protein 2

GO:

id name namespace
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K22388 NAB; NGFI-A-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932419.2 True 2677 mRNA 0.54 7 20495896 20507184
XM_026932420.2 False 2491 mRNA 0.53 6 20495896 20507184

Neighbor

gene id symbol gene type direction distance location
akr7a3 akr7a3,LOC108255199,LOC108431624,LOC108431625,LOC107706545,LOC102201483 coding upstream 30346 20458293 ~ 20465550 (+)
kcnab2a kcnab2a,kcnab2,LOC106513833,LOC108431628,LOC108255041,LOC100709904,LOC107385277,LOC108231619,LOC103136366,LOC106923773,LOC102294726,LOC103385628,LOC107712982,LOC107657983,LOC107582417,LOC107592856 coding upstream 110237 20288994 ~ 20385659 (+)
park7 park7,LOC107657982,LOC107701995 coding upstream 207142 20278572 ~ 20288754 (+)
pax7a pax7,pax7a,LOC108255053,LOC103136430 coding upstream 258493 20179908 ~ 20237403 (+)
slc45a1 slc45a1,LOC107654425 coding upstream 442750 20041339 ~ 20053146 (+)
cnpy2 LOC108255003 coding downstream 26943 20534127 ~ 20538632 (+)
ankrd52b ankrd52,LOC108255001 coding downstream 39708 20546892 ~ 20576360 (+)
LOC113538122 LOC108255274 coding downstream 89568 20596752 ~ 20603064 (+)
LOC113537838 NA coding downstream 111107 20618291 ~ 20621239 (+)
si:ch73-267c23.10 LOC108255296 coding downstream 126566 20633750 ~ 20650173 (+)
G311446 NA non-coding upstream 20209 20473896 ~ 20475687 (+)
G311447 NA non-coding upstream 22099 20472823 ~ 20473797 (+)
G311414 NA non-coding upstream 79717 20415584 ~ 20416179 (+)
G311407 NA non-coding upstream 99610 20395754 ~ 20396286 (+)
G311395 NA non-coding upstream 119198 20376013 ~ 20376698 (+)
G311471 NA non-coding downstream 12677 20519861 ~ 20521808 (+)
G311460 NA non-coding downstream 36837 20544021 ~ 20544553 (+)
G311444 NA non-coding downstream 72769 20579953 ~ 20583595 (+)
G311515 NA non-coding downstream 155584 20662768 ~ 20665745 (+)
G311516 NA non-coding downstream 159083 20666267 ~ 20668273 (+)
errfi1a errfi1 other upstream 318624 20119383 ~ 20177272 (+)
si:dkey-264d12.5 LOC108254816 other upstream 627415 19848467 ~ 19868481 (+)
vamp3 vamp3 other upstream 711971 19768983 ~ 19783925 (+)
phf13 phf13 other upstream 978718 19508189 ~ 19517178 (+)
svbp NA other upstream 997225 19494758 ~ 19498671 (+)
znf740a znf740a,LOC108254942,LOC108424621,LOC107754560,LOC107551334 other downstream 300674 20807858 ~ 20860727 (+)
hnrnpa1a LOC108255131,LOC108424623,LOC107707363,LOC107551332,LOC107754559 other downstream 363468 20870652 ~ 20882365 (+)

Expression


Co-expression Network