zgc:77375 (LOC108254961,LOC108431553,LOC107700631,LOC107758152)


Basic Information

Item Value
gene id zgc:77375
gene name LOC108254961,LOC108431553,LOC107700631,LOC107758152
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 13589033 ~ 13606451 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932421.2
ctcctcctcctctggcGTCACGTTCACTCCTCTACAAAAGCTTCATGGAGACACTGGAGCGACCGGGCACGAGCGGCGGCGGTTGTCCTGGGTGTCGGCGAAAGGGCTAAACGGAGGCGAAATGAGGGCTTTCGGTTTGGTTTTGAGGTCCGCGAGCAGCCTGGTTGCCCGGCAACAATCACGGAGGGCGATGTGCGCTTCCGCATCGCCCAGCAGAAAGTATGATCCAGGCTTCGGCTTGCTGTTCGACATCGATGGGGTTTTGGTGCGGGGAAAGACGCCCATCCCGGCGGCCAAAAAAGCTTTTCACAAGCTGGTGGACTCTAACGGCCAGTTCATGGTTCCTGTGGTTTTTGTCACAAATGCTGGGAACTGTCTGCGGCAAAAGAAAGCCGATCAGCTGTCTCACATACTGGAGGTTCCCATAACCCAAGATCAAGTCATGATGTCTCATAGTCCTCTGAGAATGTTCAGGAAATATCATGACAAGTGTGTGCTGGTATCAGGCCAAGGCCCAGTGCTGGACATTGCCAAAAACTTGGGCTTTACCAATGTGGTCAGTATCGATATGGTAAGAGAATCATTCCCCCTGCTGGACATGGTGGATCATAACCGACGACCGAAAGTGCCGtcCGCTCCTATTGTGAACCTCCCTAAAGTTGAAGCTGTGATCCTCTTTGGAGAGCCAGTTAGATGGGAGACCAACCTGCAGCTAATTATCGATGTTTTACTGACTGGTGGGAATCTGAGTAATGTGTATGAAAGTTCCCACTCCTCCCACCTGCCTCTCTTAGCATGTAACATGGACCTCATGTGGATGGCAGAAGCCCAGGCTCCAAGATTTGGTCACGGCACATTCATGGTGTGCCTGGAGAACATCTACAAGAAGATCACAGGCCAGGAGCTGAAGTACGAGGCCCTGATGGGGAAACCCAGTGAGCTGACTTATCATTACGCTGAGTATCTGATCAGAACACAGGCTGCAGAGAGAGGCTGGAGATCACCAATCACGTCACTCTACGCTGTTGGGGACAACCTCATGACGGACATCTACGGTGCCAATCTCTACAACCGCTACCTCGAGGAACGGCTGGCCAGGAAGAGTGGCAAAGCCGTGCAACAAGCTCTGACCGGCACAGGAGCGTCTGTCTCTCAGGACGAGGACACGGACAACGACTGGGAAAGCGAGTTAGCGTCTCCGTCTGCCACGTCCTGCAAGTCCATCCTGGTGTGTACAGGCGTGTATAACCCGCACATGGAGCTGCTCAAAGACACCAACCAGTGCATCAAAGAGACTGTGTTCCATGGACACCGCGACTTCCGCTTCGAGCCTGCATTGATCGAGCCGGGCAGCGTCATCCAGGATGTCCATGCTGCTGTCGAACTCATTTTCGAAATGGAAAAATTTGCAACGGAGGTTTAGTCACATGAAAACACTGAATACATGAAGATCAAACTTCTACTCTCTTGCCATTTTTAGGAactttatttcagtaaatatcTCGTAGTTATAAGGACAGATGATGAATAAGTCCATAAAGCACAATGCTTGAAGACACTGTGGTATTTTAGACATATATACCAGATAAATAGACATGATATTAGGCGTACAAGACTGTAATGTCACTTCAGGACCATCTAATTAGATGATTttcctttgtttgtgtgtttttcaacACAGTTTGCCACATGAATTggtcattttctcattttacagTATGTTACTGCAAAGTCTTTTCCCCCCAAATTTGCAGTAACTGAGAAAAAACAAGCAGAGGCCAACTTTATAATTTCTGTTATAATGCTTAAAAGAGTAAATGAGccaaaaatcaaatcaaataggTCAGGtggttgcatttattttaaaggtgttacctttattttattttattttatttttttcaaatttaccAAATATTTTAATCCtga

Function

NR:

description
PREDICTED: cat eye syndrome critical region protein 5 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932421.2 True 1929 mRNA 0.47 8 13589033 13606451

Neighbor

gene id symbol gene type direction distance location
isy1 isy1,LOC108254962,LOC108431508,LOC107700632 coding upstream 2062 13579360 ~ 13586971 (+)
LOC113537916 LOC108254963 coding upstream 10674 13569089 ~ 13578359 (+)
cnbpb cnbp,cnbpb,LOC108254964,LOC108431552,LOC106566283,LOC105905103,LOC107742027 coding upstream 20072 13565069 ~ 13568961 (+)
mkrn2 mkrn2 coding upstream 67621 13508409 ~ 13521412 (+)
tsen2 tsen2 coding upstream 93048 13481411 ~ 13495985 (+)
nuf2 nuf2 coding downstream 10558 13617009 ~ 13628791 (+)
si:dkey-42i9.6 NA coding downstream 25654 13632105 ~ 13649265 (+)
si:dkey-42i9.4 LOC108254831,LOC108269908,LOC108431510,LOC108281067 coding downstream 62969 13669420 ~ 13671305 (+)
ecm2 ecm2,LOC107658384,LOC107586919 coding downstream 99270 13705721 ~ 13721720 (+)
aspn aspn coding downstream 119409 13725860 ~ 13733282 (+)
G307161 NA non-coding upstream 64979 13522009 ~ 13524054 (+)
G307154 NA non-coding upstream 87202 13501466 ~ 13501831 (+)
G307079 NA non-coding upstream 238353 13350453 ~ 13350680 (+)
G306959 NA non-coding upstream 254788 13331687 ~ 13334245 (+)
LOC117599900 NA non-coding downstream 333975 13940426 ~ 13960190 (+)
G307272 NA non-coding downstream 397157 14003608 ~ 14003831 (+)
G307262 pdhb,LOC107721006 non-coding downstream 408711 14015162 ~ 14016394 (+)
G307293 rpp14,LOC103374991 non-coding downstream 445384 14051835 ~ 14058202 (+)
G307281 NA non-coding downstream 489819 14096270 ~ 14096786 (+)
G306480 tuba1c,LOC103148207,LOC106920718,LOC102311436,LOC101065103 other upstream 1126497 12457601 ~ 12462536 (+)
G306103 NA other upstream 2073220 11515059 ~ 11515813 (+)
G305955 iqsec1 other upstream 2107933 11480669 ~ 11481100 (+)
G305869 NA other upstream 2262673 11325604 ~ 11326360 (+)
G305863 iqsec1,iqsec1b other upstream 2273597 11314184 ~ 11315436 (+)
ippk ippk,LOC107755999,LOC106566243 other downstream 67903 13674354 ~ 13692912 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other downstream 573332 14179783 ~ 14476817 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other downstream 908141 14514592 ~ 14524976 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other downstream 2150439 15756890 ~ 15799890 (+)
amigo3 amigo3 other downstream 2882910 16489361 ~ 16501684 (+)

Expression


Co-expression Network