park7 (park7,LOC107657982,LOC107701995)


Basic Information

Item Value
gene id park7
gene name park7,LOC107657982,LOC107701995
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 20278572 ~ 20288754 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932422.2
CTAGGGTTTGAAGTAAAGGCCCCTgcaccctatctagtgcactatatcTACACTTTTAAGGCATTTGGACCTTTGGGATTTATTTTAAGGGCTATAACGGAAACTTTCTGCTGcagtttctccagtttctccTGGTGTTTCGGTGAAAGTCATGGCTGCTAAGCGAGCTTTAGTGATTTTGTCGAAGGGGGCGGAGGAGATGGAGACAGTGATACCGGTGGACGTCATGCGCAGAGCCGGGatcGCTGTGACTCTAGCAGGACTGATGGGGAAGGATCCTGTTCAGTGCAGCCGTGACGTCCTCATCTGTCCAGACTCGAGCCTGGAAGAAGCCTCGAAACAGGGCCCGTATGACGTGGTTCTGTTACCCGGAGGCCTGGTCGGAGCCCAGAACCTGTCCGAGTCTCCCGCTGTGAAGGAGGTGTTGAAGGAGCAGGAGGGCAGGAAGGGGCTGATCGCTGCCATCTGCGCAGGTCCCACAGCGCTTTTAGCTCACGGAATCGGTTACGGCAGCACCGTCACGACCCACCCGGGTGCCAAAGACAAGATGATGGCTGGAGatcACTATAAGTATTCAGAGGCCCGTGTTCAGAAAGACGGACACCTGATCACGAGCCGAGGCCCGGGCACCAGCTTCGAGTTCGCCCTGGCCATAGTGGAGGAGCTGCTGGGCGCCGAGGTGGCCGCTCAGGTCAAAGCACCTCTCATCCTGAAAGATTAATAAAGATCAATTCATCcaaatgctaattaattaatctgtCCTGCACTTCATTAAATGGAGCAGCAAATAACATATGAGTATTACTGTAtggattcttcttttttttgaagAATAAAAGCACCTTATATTGAGAAAGAAGAACTTTTTGTTGCATAGTGGtaccaggcaaaaaaaaaacaacaacaatagaaaCCCTCACAGAATtcgtaatggttttaatggttataatgggaattgtattggttttaattgaagctctaatggtccctgtgggtctctactggtaatttgttgccttctattggtgacATGTCTAGTAGATACCATTAAGGTATATTAAACtgataatggtaatggttttaatggttagctgatggtttgtaatggtatttgtagtggaaaccattagactttctgtgatgatttttttttttttcagcagtagTGGCACGTTTAAGCACCTtaaattttgtttctttgcCAAAATAGGAACAAAATCACTGTAAAATTGTGTTAGCAATCTTGTGACGTGGCACACTTGTGAAAAATTAAACCATATCCTACAGTAAAAA

Function

symbol description
park7 Predicted to enable several functions, including hydro-lyase activity; peptidase activity; and protein homodimerization activity. Acts upstream of or within response to oxidative stress. Predicted to be located in mitochondrion. Predicted to be active in cytosol and nucleus. Is expressed in several structures, including alar plate midbrain region; digestive system; male organism; musculature system; and nervous system. Used to study Parkinson's disease. Human ortholog(s) of this gene implicated in Parkinson's disease; Parkinson's disease 7; Parkinsonism; cerebral infarction; and middle cerebral artery infarction. Orthologous to human PARK7 (Parkinsonism associated deglycase).

NR:

description
protein deglycase DJ-1zDJ-1-like

GO:

id name namespace
GO:0006914 autophagy biological_process
GO:0006954 inflammatory response biological_process
GO:0070301 cellular response to hydrogen peroxide biological_process
GO:2000277 positive regulation of oxidative phosphorylation uncoupler activity biological_process
GO:0007338 single fertilization biological_process
GO:0006508 proteolysis biological_process
GO:0060548 negative regulation of cell death biological_process
GO:0050821 protein stabilization biological_process
GO:0043523 regulation of neuron apoptotic process biological_process
GO:0005634 nucleus cellular_component
GO:0005739 mitochondrion cellular_component
GO:0042803 protein homodimerization activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0003729 mRNA binding molecular_function

KEGG:

id description
K05687 PARK7; protein DJ-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932422.2 True 1293 mRNA 0.45 6 20278572 20288754

Neighbor

gene id symbol gene type direction distance location
pax7a pax7,pax7a,LOC108255053,LOC103136430 coding upstream 41169 20179908 ~ 20237403 (+)
slc45a1 slc45a1,LOC107654425 coding upstream 225426 20041339 ~ 20053146 (+)
mmel1 mmel1,LOC107712974,LOC107654428,LOC107756657,LOC107702001,LOC107592889 coding upstream 255583 20004405 ~ 20022989 (+)
si:ch211-193i15.1 LOC108254870 coding upstream 384152 19883826 ~ 19894420 (+)
si:dkey-264d12.1 LOC108254813 coding upstream 444143 19815906 ~ 19834429 (+)
kcnab2a kcnab2a,kcnab2,LOC106513833,LOC108431628,LOC108255041,LOC100709904,LOC107385277,LOC108231619,LOC103136366,LOC106923773,LOC102294726,LOC103385628,LOC107712982,LOC107657983,LOC107582417,LOC107592856 coding downstream 240 20288994 ~ 20385659 (+)
akr7a3 akr7a3,LOC108255199,LOC108431624,LOC108431625,LOC107706545,LOC102201483 coding downstream 169539 20458293 ~ 20465550 (+)
nab2 LOC108255101,LOC108431520 coding downstream 207142 20495896 ~ 20507184 (+)
cnpy2 LOC108255003 coding downstream 245373 20534127 ~ 20538632 (+)
ankrd52b ankrd52,LOC108255001 coding downstream 258138 20546892 ~ 20576360 (+)
G311246 NA non-coding upstream 168348 20109961 ~ 20110224 (+)
G311232 NA non-coding upstream 207213 20070973 ~ 20071359 (+)
G311227 NA non-coding upstream 221998 20037205 ~ 20056574 (+)
G311220 NA non-coding upstream 250260 20027896 ~ 20028312 (+)
G311225 NA non-coding upstream 282302 19996064 ~ 19996270 (+)
G311395 NA non-coding downstream 87259 20376013 ~ 20376698 (+)
G311407 NA non-coding downstream 107000 20395754 ~ 20396286 (+)
G311414 NA non-coding downstream 126830 20415584 ~ 20416179 (+)
G311447 NA non-coding downstream 184069 20472823 ~ 20473797 (+)
G311446 NA non-coding downstream 185142 20473896 ~ 20475687 (+)
errfi1a errfi1 other upstream 101300 20119383 ~ 20177272 (+)
si:dkey-264d12.5 LOC108254816 other upstream 410091 19848467 ~ 19868481 (+)
vamp3 vamp3 other upstream 494647 19768983 ~ 19783925 (+)
phf13 phf13 other upstream 761394 19508189 ~ 19517178 (+)
svbp NA other upstream 779901 19494758 ~ 19498671 (+)
znf740a znf740a,LOC108254942,LOC108424621,LOC107754560,LOC107551334 other downstream 519104 20807858 ~ 20860727 (+)
hnrnpa1a LOC108255131,LOC108424623,LOC107707363,LOC107551332,LOC107754559 other downstream 581898 20870652 ~ 20882365 (+)

Expression


Co-expression Network