pde12 (pde12)


Basic Information

Item Value
gene id pde12
gene name pde12
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 16893231 ~ 16897114 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932443.2
ACGCAAATATTAAGCGACGCGTCCGGTAGCTTGTAGCGATAGGATGAATCACAAATCGGTCCCTTTAGGATGTTTAAGGCACGGTATAGGTTGTAAAATCTGTTTCTGCTGTATCCTATTTAGTGTACTTATACAGGGATCATTGAGGCGTTTGAGATACAGCACAAATTACTCAGCCATTATTTGTGAAAAGCACACTTCCTGATGTTAATCCGCACTATCTTTTCTAGACCATATTTGCGTTATGTTTTGTTGCAGAAGAGAATATTAGTAGatgataatattttaatcaGACATTTTTGCAGCAGGATGGATCGCGCAGTTGTGCGCTGTGTGCCCTCGGAGCCCAAGCTGACCATTTCATTCAGTCTGGCCGGTAGCTCCAGACACATGCTGAGGGAGCAAACAGAGGAGCTGGGTAAGGTGCTAGCCCGGATATCTAACAGCATTATCAAGGCGCAGAGCAAAGGGAAGAAGTCGAAGAAGAGTAAAAGCGCGAGCGAAAGCGCGAGCGCGAGCAGGGATGCGGCGGACCCGGTGGTGCGGCTTTACTTTAACGGCGACGTGGTGGCTGAAGACGCGCTGAACCGCGACGCGTGGCAGGACGGCGCCGTGCTGCAGGTCGGAGACGCAAAATACAAAGTTGAACGCAATCCTCCGACTTTCACAACCGCACAGCTCCCCGCGTCAGTCCTCGCCGGATTTCCTGTCTGCCCCAAACTGGAGATGGAATTCGGGGATTTGAGATTCTGTGTGTTCAAGTGGTACAAGGAAAGCTCTCCAAACGCGCGCACACGCGGAGAAGAGGACTCCTGGGTGGAAGCAGGAAGCGACCGAGTCTTTACACCATCCAATACAGATGTGGGGTTGAGACTGAAGCTGAAATGCATGCCGGGAAGCGAGTCCAGGTTAGGCCTTCCGGTAGAGCTGGTAACCTCAAGCTCTGTGGAGGCTGGTCCAGGGGTTTGCACGTTTGACAACAGACACTTGTACACCCGCAAGGTCACGAATGAGTCCACAACCAGGGTTGTGACCTACAACATCTTAGCAGACATCTACAGTCAAACTGAGCTCTCGAAAACAGTCCTGTACCCTTACTGTGCCTATGCACTTAAACTGGACTACAGGCAAAACCTCATCAAGAAGGAGCTTTCAGGGTATAATGCTGACATCGTCTGTCTCCAGGAGGTGGATAAAGGAGTCTTCAGTGATAGCCTGGCACCTGCACTTGACGCGTTCGGCATGGACGGGGTGTTCAAAGTGAAAGAGAAGCAGCACGAAGGACTGGCCACATTTTACAGGAGATCAAAATTTAGGTTGCTCTCCAGACATGACATCATGCTGAGCGAGGCTTTAGAAATGGACGCGCTCCATAGCGTGCTCCTGGAGAAACTGTCCACCAACCCAGTGTTGAAAGAGAAGGTGGTACAGAGAAGTACGACACTGCAGGTAACTGTTTTGCAGTCCATAAGCGATCCATCAAAGATAGTGTGCGTTGGAAACACACATCTCTACTGGCACCCTAAAGGGGGAAACATTCGATTAATACAGATGGCTGTAGCCCTCAAGCACCTGAAGAAAGTCATCGCAGAAGAACATGGTGGTGCACTGATATTCTGCGGCGACTTCAACAGCACGCCATCGTCAGGACTCTTCCAGCTGCTCAGTCAGGGTTCACTAGCAGAGCAGCACAGTGACTGGGCATCTAATGGGCCTGAGGAGCTTCTTCAAATGGAGCTTCACAGCCCCTTTCAGCTGATCAGTGCGTGTGGAGTACCGGACTACACCAACTATGTAGGAGGCTTTAATGGTTGTCTAGACTACATTTTCATGGAGCCGCAGGCTTTGCAGGTAGAGCAGGTCATTCCTCTGCCCAGTCACCAGGAGCTCACCACGTACCATGCCCTTCCCAGTGTCTCTCACCCATCTGACCATATCGCTTTAGTCTGCGACCTCAAATGGAAATAAGGTTGAGACGCAGCCTCAGCTTTCCTCCTGCAAGTGAACGTCTAGATCGGGTTTTAAATCCACAGAATCACATTGCCTTCTCTAGTTGAGGGCAGAACACTTCAATTTCTGATTTACTGCGGCAACAAGATGACTCGCTGTTTATTTATCAATCTGTTTGACTCATGGATTGTGGTGgtgatattttacatttataaaaagcaTAAACAGCTTGTTGGCTATGAAATCTTTTTTGATCAGGAAAGCAGTCCATAAGATAATCCCGAGTGCAATATGAAAACAATGAATGCCGGCTTgatgtaattaaataataattaaaagtatTATTCAACTGA

Function

symbol description
pde12 Predicted to enable 3'-5'-exoribonuclease activity. Predicted to be involved in nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay. Predicted to be active in mitochondrion. Orthologous to human PDE12 (phosphodiesterase 12).

NR:

description
2',5'-phosphodiesterase 12

GO: NA

KEGG:

id description
K19612 PDE12; 2',5'-phosphodiesterase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932443.2 True 2303 mRNA 0.48 4 16893231 16897114

Neighbor

gene id symbol gene type direction distance location
atp6ap1la atp6ap1l,LOC108254970,LOC107680564 coding upstream 1923 16882002 ~ 16891308 (+)
ccdc66 NA coding upstream 205688 16672820 ~ 16687543 (+)
nicn1 nicn1 coding upstream 1015965 15863456 ~ 15877266 (+)
rbm15b rbm15b coding upstream 1504103 15385294 ~ 15389128 (+)
manf manf,LOC107592842,LOC107691893,LOC107750980,LOC106583751 coding upstream 1510283 15375847 ~ 15382948 (+)
LOC113537970 arf4,LOC108254967 coding downstream 13291 16910405 ~ 16912976 (+)
slmapa slmap coding downstream 47350 16944464 ~ 16998819 (+)
LOC113537897 flnb,LOC107657976,LOC107712990 coding downstream 109493 17006607 ~ 17075644 (+)
LOC113537900 LOC108254753 coding downstream 179432 17076546 ~ 17078049 (+)
abhd6a abhd6,abhd6a,LOC107657977,LOC105904082 coding downstream 189663 17086777 ~ 17100430 (+)
G309135 rps23,LOC106566095 non-coding upstream 10718 16797131 ~ 16882513 (+)
G309170 NA non-coding upstream 28586 16862146 ~ 16864645 (+)
G309056 NA non-coding upstream 297881 16595137 ~ 16595350 (+)
G308915 NA non-coding upstream 587228 16305796 ~ 16306003 (+)
G308827 NA non-coding upstream 772942 16119831 ~ 16120289 (+)
G309184 NA non-coding downstream 6067 16903181 ~ 17000024 (+)
G309187 NA non-coding downstream 6743 16903857 ~ 16904257 (+)
G309194 NA non-coding downstream 20885 16917999 ~ 16919155 (+)
G309201 NA non-coding downstream 71282 16968396 ~ 16969437 (+)
G309208 NA non-coding downstream 118522 17015636 ~ 17016244 (+)
amigo3 amigo3 other upstream 391547 16489361 ~ 16501684 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other upstream 1093341 15756890 ~ 15799890 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other upstream 2368255 14514592 ~ 14524976 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other upstream 2416414 14179783 ~ 14476817 (+)
ippk ippk,LOC107755999,LOC106566243 other upstream 3200319 13674354 ~ 13692912 (+)
LOC113537865 LOC108280979 other downstream 363865 17260979 ~ 17263663 (+)
snrpe snrpe other downstream 1790283 18687397 ~ 18692014 (+)
G310681 LOC108254836 other downstream 2189911 19087025 ~ 19087806 (+)
svbp NA other downstream 2597644 19494758 ~ 19498671 (+)
phf13 phf13 other downstream 2611075 19508189 ~ 19517178 (+)

Expression


Co-expression Network