nmur3 (LOC108281099,LOC108439501)


Basic Information

Item Value
gene id nmur3
gene name LOC108281099,LOC108439501
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 12177090 ~ 12185144 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932486.2
CTAAGGATCTGTGTCCCAGATTGTTGCCTTTAGATGCCTTACTTCAGAATGTCCATAAAATGCTTTTGTGAGCCTGTTCTGAATGGGACTGAATTTGATCTCGCTCTATGCAACATATCTTCATTCAACCACACTGGCAATGGAAGTGAACCTTGTCAGCCCCAAACATTGGAAGATATCCTGCTCAGACTCCTTGGGCCAAGGAGGTCTCCATTCTTCCTCCCGGTGACACTAACATACATACTTATCTTTGTCACTGGTGTGATAGGGAACCTTCTCACCTGCACTGTGATCACTAAGCACAGAAAGATGAGAACACCCACCAACCTATACCTCTTCAGCTTGGCCATCTCTGATTTGCTGGTACTGCTGTTTGGAATGCCTCTGGAGATATATGACTTGTGGCAGAACTACCCTTTCCCATTTGGTGAGAGCATTTGCTGTTTCAAGATCTTTTTGTTTGAGACAGTTTGCTTTGCATCTGTGCTCAATGTCATGGTTCTAAGCATTGAACGCTATGTGGCTGTGGTCCACCCACTCAAGACTCGATATGCCatcaccaacaaacatgcccAGAGGGTTATCGGAGGGGTTTGGGTTGTGTCCCTGGTCTGCGCCATCCCCAACACCTCCCTCCATGgcctacattattattatctacCTGAGAAGGTCCTAGAGTCAGCCACCTGCAACCTTCTCAAGCCCCAGTGGATCTACAACTTGGTGATCCAGGTGACCACCATTCTATTCTACTTTGTGCCCATGACAGTGATTAGTGTGCTCTATCTAGTGATAGGGATAAGGTTGGGAAGGGAGCAGAGGCAGAAGGGTAGGAAACTGGGGAAGAATTGCAGTGCAGACACCAGCTGGAAGATCCAAGTTGAGAGTGGACGCAGGAGGCAGATCACCAAAATGCTAGCTGTCGTGGTGCTGGCCTTTGCTATCTGCTGGGCACCATTCCATATTGACAGACTCTTGTGGAGTTTCATCACTAATTGGACCGACCACATGCACAACATCTTTGAGTACGTGCATATCCTCTCCGGAGTGTTGTTTTACCTCAGCTCTGCCATCAATCCTATCATCTACAACCTTCTCTCCAGCCGCTTTCGAGAGCGATTTTTCGAGCTGATGTGTAGGCACCCAGGAGTCAACACATCACGGAGCAGCTCTCCACCCTACAGCAAGAGGATTTCCTTCCCTAAAAGCCACGAGGCTGTCAGAACCAACTCTCAGGGCCACAGCAGCTATCCAAAAGGCCCCCAACCCTCTGTTATCCTCGGCACAGGATGGGAACAGGAGTTTGACACTACCTTTATGTAA

Function

NR:

description
PREDICTED: neuromedin-U receptor 2-like

GO: NA

KEGG:

id description
K05053 NMUR2; neuromedin U receptor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932486.2 True 1323 mRNA 0.48 2 12177090 12185144

Neighbor

gene id symbol gene type direction distance location
alpl alpl,LOC107691326,LOC107685635 coding upstream 80334 12067624 ~ 12096756 (+)
barx1 barx1,LOC107727794,LOC107685643,LOC107691398 coding upstream 379656 11794011 ~ 11797434 (+)
fbln2 fbln2,LOC108254974 coding upstream 505631 11608922 ~ 11671459 (+)
hdac11 hdac11,LOC107749433,LOC107727860 coding upstream 593641 11543739 ~ 11583449 (+)
cfap92 NA coding upstream 903611 11256014 ~ 11273479 (+)
ephb2b ephb2b,LOC108255231,LOC108439490,LOC107727812,LOC107568432,LOC107691322,LOC101487531,LOC107685632,LOC102295218,LOC100712288 coding downstream 80561 12265705 ~ 12413095 (+)
mcrs1 mcrs1,LOC107696040 coding downstream 232466 12417610 ~ 12427033 (+)
suox suox coding downstream 249365 12434509 ~ 12454321 (+)
prph prph coding downstream 288912 12474056 ~ 12485975 (+)
timeless timeless,LOC107689440 coding downstream 311165 12496309 ~ 12527278 (+)
G306433 NA non-coding upstream 22540 12154295 ~ 12154550 (+)
G306432 NA non-coding upstream 24921 12143548 ~ 12152169 (+)
G306300 NA non-coding upstream 234797 11942035 ~ 11942293 (+)
G306295 NA non-coding upstream 239679 11937184 ~ 11937411 (+)
G306290 cass4 non-coding upstream 246889 11929712 ~ 11930201 (+)
G306452 NA non-coding downstream 99807 12284951 ~ 12289757 (+)
G306470 NA non-coding downstream 110225 12295369 ~ 12295729 (+)
G306479 NA non-coding downstream 252055 12437199 ~ 12448374 (+)
G306503 NA non-coding downstream 387278 12572422 ~ 12573759 (+)
G306744 NA non-coding downstream 612604 12797748 ~ 12797982 (+)
G306103 NA other upstream 661277 11515059 ~ 11515813 (+)
G305955 iqsec1 other upstream 695990 11480669 ~ 11481100 (+)
G305869 NA other upstream 850730 11325604 ~ 11326360 (+)
G305863 iqsec1,iqsec1b other upstream 861654 11314184 ~ 11315436 (+)
dynlrb1 dynlrb1,LOC106565026 other upstream 955550 11214752 ~ 11221540 (+)
G306480 tuba1c,LOC103148207,LOC106920718,LOC102311436,LOC101065103 other downstream 272457 12457601 ~ 12462536 (+)
ippk ippk,LOC107755999,LOC106566243 other downstream 1489210 13674354 ~ 13692912 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other downstream 1994639 14179783 ~ 14476817 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other downstream 2329448 14514592 ~ 14524976 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other downstream 3571746 15756890 ~ 15799890 (+)

Expression


Co-expression Network