isy1 (isy1,LOC108254962,LOC108431508,LOC107700632)


Basic Information

Item Value
gene id isy1
gene name isy1,LOC108254962,LOC108431508,LOC107700632
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 13579360 ~ 13586971 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932508.2
GTCTGCGCCACGGAAGTTGTTGTTCTTGCGTCATATTTTTGCGTCGGCGCTCTCATACGTAAGGGTGTCTGCCTTGAAAAGCAGCCATGGCTCGAAACGCAGAAAAGGCCATGACGGCCTTGGCCAGGTTTCGTCAAGCCCAACTAGAAGAAGGAAAAGTGAAGGAGAGACGGCCTTATCTTGCCTCAGAATGCAACGAGTTGCCTAAAGCAGAGAAGTGGAGACGGCAGATCATCAGTGAAATTTCAAAGAAGGTGGCACAGATTCAGAACGCTGGTTTAGGGGAATTCAAGATTCGTGACTTGAATGATGAAATCAACAAGCTTCTCCGTGAGAAGGGCCACTGGGAGGTTCGAATCAAAGAACTGGGAGGCCCTGACTATGCGAGAATCGGACCAAAGATGCTGGATCATGAGGGCAAAGAAGTACCAGGAAACAGAGGTTACAAATATTTTGGAGCTGCAAAAGACCTGCCTGGAGTCAGAGAGCTCTTTGAAAAAGAACCTGTACCACCACCCAGAAAAACGAGGGGTGAGCTGATGAAGGAGATCGATGCTGAGTATTATGGCTACCGAGATGAGGACGACGGTGTGTTAGTGCCCTTGGAACAAGAATATGAAAAACAAGCAATAGCAGAAGCCATTGAGAAGTGGAAGGCAGAAAAAGAGGCTCGTTTAGCTGGGGGCGGAGGGGCAAAAGAGgtggaagaagaggaagaataCATATATGCTGTCAAAGATGATGAGtctgatgatgagatgagggaacagatggagggagaggaTGGAGCACAAACCTTTATTGCTCATGTACCTGTGCCATCACAGAAAGAGATCGAAGAAGCCTTGgtcagaagaaaaaagatggagCTGCTCCAGAAGTACGCCAGCGAGAGCTTAATGGCACAAAGTGAAGAAGCTAAAGCGCTGCTCGGCTTGTAACGATTTCCAACATCAAAGTTCATgcatttaattgtttgttttgaggGTATTCAGGTGATGCAGagtaaatgtgtataatgccaTTCAAAAATTGAAACTGGAACTCTTGAATCCATTTTGATGTGCATGTGACTGTCTAACTCCACAAAACTGGCAAAATGCATTTCAGTGGCTCATATATGCCAATATAATGACACACTGTCGTTTCTGTTTATAAGAGGAGTGTTTTATGATGTGACTATACCGTATTATTCCAGCCATTTCCGAATGTcagacactatatggccaaaagtttttggacacctgaccatcacacccatatgtgctttttgactatctcattccagatttagtccccctttgctgttataataacctccacttttctgagaaggctttccactagattttgaagcctggctctggggatttgtgttcattcagccataagagcatcagtgaggtctggcactgatgttgagtgagaaGGCCTGTCACGTAGACAACGTTCcagctcatcccaaaggtgttcagtgggattgaggtcagggctctgtgcaggacattcGAGTTCTTCTACAGCAACCTTGGCAAACAGTGTCTTATTGGAGttcgttttgtgcacaggggcattgtcatgctggaacaggtttgtgcctcttagttccattgaaaagaaattgtaatgctacagcatacaaagatatcctatacaattgtgtgcttccagttttgtggcaacactttggggaagacccacatatgggtcgTGATGtacaggtgtccacatactttggccatatagtgtgttttGGGGAAATATGTTGTTGAATATCAACACCAGCTAACAATtctttgtaaatatgttttgtaTACAGTGCTCGCATTTTTGGACCAGTAAAAATTTTCTACAAAA

Function

symbol description
isy1 Predicted to be involved in generation of catalytic spliceosome for second transesterification step and mRNA 3'-splice site recognition. Predicted to be located in nucleus. Predicted to be part of Prp19 complex and spliceosomal complex. Orthologous to several human genes including ISY1-RAB43 (ISY1-RAB43 readthrough).

NR:

description
pre-mRNA-splicing factor ISY1 homolog

GO: NA

KEGG:

id description
K12870 ISY1; pre-mRNA-splicing factor ISY1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932508.2 True 1857 mRNA 0.44 11 13579360 13586971

Neighbor

gene id symbol gene type direction distance location
LOC113537916 LOC108254963 coding upstream 1001 13569089 ~ 13578359 (+)
cnbpb cnbp,cnbpb,LOC108254964,LOC108431552,LOC106566283,LOC105905103,LOC107742027 coding upstream 10399 13565069 ~ 13568961 (+)
mkrn2 mkrn2 coding upstream 57948 13508409 ~ 13521412 (+)
tsen2 tsen2 coding upstream 83375 13481411 ~ 13495985 (+)
pparg pparg,LOC107742034,LOC107667870,LOC107571218 coding upstream 102771 13440659 ~ 13476589 (+)
zgc:77375 LOC108254961,LOC108431553,LOC107700631,LOC107758152 coding downstream 2062 13589033 ~ 13606451 (+)
nuf2 nuf2 coding downstream 30038 13617009 ~ 13628791 (+)
si:dkey-42i9.6 NA coding downstream 45134 13632105 ~ 13649265 (+)
si:dkey-42i9.4 LOC108254831,LOC108269908,LOC108431510,LOC108281067 coding downstream 82449 13669420 ~ 13671305 (+)
ecm2 ecm2,LOC107658384,LOC107586919 coding downstream 118750 13705721 ~ 13721720 (+)
G307161 NA non-coding upstream 55306 13522009 ~ 13524054 (+)
G307154 NA non-coding upstream 77529 13501466 ~ 13501831 (+)
G307079 NA non-coding upstream 228680 13350453 ~ 13350680 (+)
G306959 NA non-coding upstream 245115 13331687 ~ 13334245 (+)
LOC117599900 NA non-coding downstream 353455 13940426 ~ 13960190 (+)
G307272 NA non-coding downstream 416637 14003608 ~ 14003831 (+)
G307262 pdhb,LOC107721006 non-coding downstream 428191 14015162 ~ 14016394 (+)
G307293 rpp14,LOC103374991 non-coding downstream 464864 14051835 ~ 14058202 (+)
G307281 NA non-coding downstream 509299 14096270 ~ 14096786 (+)
G306480 tuba1c,LOC103148207,LOC106920718,LOC102311436,LOC101065103 other upstream 1116824 12457601 ~ 12462536 (+)
G306103 NA other upstream 2063547 11515059 ~ 11515813 (+)
G305955 iqsec1 other upstream 2098260 11480669 ~ 11481100 (+)
G305869 NA other upstream 2253000 11325604 ~ 11326360 (+)
G305863 iqsec1,iqsec1b other upstream 2263924 11314184 ~ 11315436 (+)
ippk ippk,LOC107755999,LOC106566243 other downstream 87383 13674354 ~ 13692912 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other downstream 592812 14179783 ~ 14476817 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other downstream 927621 14514592 ~ 14524976 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other downstream 2169919 15756890 ~ 15799890 (+)
amigo3 amigo3 other downstream 2902390 16489361 ~ 16501684 (+)

Expression


Co-expression Network