ssuh2.1 (LOC108255262,LOC108436692)


Basic Information

Item Value
gene id ssuh2.1
gene name LOC108255262,LOC108436692
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 15045544 ~ 15062000 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932530.2
CGAGCCCGCtaagtgggcgtggctttaTCGAACGTCAACAGGCACGCACGCAAGTTGAACTCAGATCAAAATAATCATCCAGACTTTGTTAAGATTCATTAGATTTTAACCCTCTGCTTAAACCTGCTCTGTTTCTTCAGGATTATGGATGAGAAAGAGCACAATGTCGGAGCCTTTGATCCAAGCATTCCTGAGGAGGGTCCTTCAGCGCCACCTGCAGGCTGGTTGGACAGTGTGACGGGCTACGAAGACCATAAAGGTGGAGATAGCACAGATCAGATCTACCCTCCTCCGCCTGACTTCATTCCTGAGCCGGAGAATGACAGGAACGTCTCCATCCCTAATGTGATGGTGCCTCAGGTGTCTGAAGATGTGGCCAGGGAGGCTTTGCTCAagtttgtggggaaaaaatggacaTACAGCAGCAAACCCGCCCAGAACCTTGTCTTCAAAGATTTGAAGCCTTTTACAGTGTATCGTTATCGCTTGGAAACATTTACAGAGTCAAGATCAAGTGCCTGGGAGCATGAGATATATAATGGTCAGTATGTGGACGGGCCGCAGTATGGCATCATCCCTCCTCCATGGCAAGTAGAAGTGCAATATCCACCCAAATTCACTGACACGGTCCAGAAAGTGCGTGTGCCTCACACCTCATCTGTAAAGCCTTGTCATCAGTGCCAGGGGAAAGGACGTGTGCGCTGTACACACTGCCATAGCAGAGGATGGATCAGCTGTATGTCCTGTCATGGCGCTATACACGGTAGGAACAGAAGATGCGTTGGCTGCCATGGAAGGGGAAGAAAAGTATGTACATGGTGCCATGGTAACGGTCATAAAACATGCCGCAAGTGTAATGGCCGTAAAAAGCTTTTGCATTTCATTCAGCTCACTGTCACATGGAAGAACCAAGTGTATGAGTTCATACCGGACCGGCTGCCTGATTTCCCCATAAAGAAGTTTGAGAAAGTGTCTGGGGAAGCATTCTTTATAGATGAAAGTCTCCtgGTCTATCCAATCGTAGGCTTCCCTGACAAGGAGATTTGCAATGCCTCTGAAGAAGCCATCCATGAGCACCTGAACAAATACTCCACTGTCAGTCGCATCTTGCAACAGCGACAGTCAGTAGAGCTGGTGCCTCTTACTCAAGCCTTCTACTCCTACAATGGCAAACACTATGACTATTTTGTTTATGGGACTGAAAAGAAGGTTCACACCACAAAATATCCAACTTCTTGCACTATCCTGTAGCATCTCATGCAATGTGAAAAAATTATTGtcacttttttattgttaaattctGGCTCCTGAGCAGTACATTACAGAGATTATAATAGCTTCTTTGTTATACGTCACCTTATTATTCTATGCATGATGTTAATAATATGTGCCAATGAAATGATTTGTCAGTTATAagaattataattatgtatgaatgaatgtttaaacatttctaATTGTATAGTGTAGgtttatattacataatacGTAAGTGTTGAgaatcattattaatattataaatcagTAATTCAGTCTAATGCCAAGTTGGATCACtttatatacacagtatgttttgaatttttaacaatatgtactaaatatttatatacccATTTGTAACAGGGCtctgaatttaaataaatgccacATTGTATGGAAATGAACTTTATTGGATGTGGCTTCTGATTATTTCAGAGTCTCTTGCCATAATCACTGTAAAAAGATCTTATTTGAAGCTacttaataatgttaaaaactAAACTATCCAGTGCAATACTGCTAAATGGAAAGGCCATTTGtctt
>XM_034314012.1
TACGAGCCCGCtaagtgggcgtggctttaTCGAACGTCAACAGGCACGCACGCAAGTTGAACTCAGATCAAAATAATCATCCAGACTTTGTTAAGATTCATTAGATTTTAACCCTCTGCTTAAACCTGCTCTGTTTCTTCAGGATTATGGATGAGAAAGAGCACAATGTCGGAAGAGGAATATCAGCTTGGACAGTGTCAGCTGCTTTGACTTCAGGAGCCTTTGATCCAAGCATTCCTGAGGAGGGTCCTTCAGCGCCACCTGCAGGCTGGTTGGACAGTGTGACGGGCTACGAAGACCATAAAGGTGGAGATAGCACAGATCAGATCTACCCTCCTCCGCCTGACTTCATTCCTGAGCCGGAGAATGACAGGAACGTCTCCATCCCTAATGTGATGGTGCCTCAGGTGTCTGAAGATGTGGCCAGGGAGGCTTTGCTCAagtttgtggggaaaaaatggacaTACAGCAGCAAACCCGCCCAGAACCTTGTCTTCAAAGATTTGAAGCCTTTTACAGTGTATCGTTATCGCTTGGAAACATTTACAGAGTCAAGATCAAGTGCCTGGGAGCATGAGATATATAATGGTCAGTATGTGGACGGGCCGCAGTATGGCATCATCCCTCCTCCATGGCAAGTAGAAGTGCAATATCCACCCAAATTCACTGACACGGTCCAGAAAGTGCGTGTGCCTCACACCTCATCTGTAAAGCCTTGTCATCAGTGCCAGGGGAAAGGACGTGTGCGCTGTACACACTGCCATAGCAGAGGATGGATCAGCTGTATGTCCTGTCATGGCGCTATACACGGTAGGAACAGAAGATGCGTTGGCTGCCATGGAAGGGGAAGAAAAGTATGTACATGGTGCCATGGTAACGGTCATAAAACATGCCGCAAGTGTAATGGCCGTAAAAAGCTTTTGCATTTCATTCAGCTCACTGTCACATGGAAGAACCAAGTGTATGAGTTCATACCGGACCGGCTGCCTGATTTCCCCATAAAGAAGTTTGAGAAAGTGTCTGGGGAAGCATTCTTTATAGATGAAAGTCTCCtgGTCTATCCAATCGTAGGCTTCCCTGACAAGGAGATTTGCAATGCCTCTGAAGAAGCCATCCATGAGCACCTGAACAAATACTCCACTGTCAGTCGCATCTTGCAACAGCGACAGTCAGTAGAGCTGGTGCCTCTTACTCAAGCCTTCTACTCCTACAATGGCAAACACTATGACTATTTTGTTTATGGGACTGAAAAGAAGGTTCACACCACAAAATATCCAACTTCTTGCACTATCCTGTAGCATCTCATGCAATGTGAAAAAATTATTGtcacttttttattgttaaattctGGCTCCTGAGCAGTACATTACAGAGATTATAATAGCTTCTTTGTTATACGTCACCTTATTATTCTATGCATGATGTTAATAATATGTGCCAATGAAATGATTTGTCAGTTATAagaattataattatgtatgaatgaatgtttaaacatttctaATTGTATAGTGTAGgtttatattacataatacGTAAGTGTTGAgaatcattattaatattataaatcagTAATTCAGTCTAATGCCAAGTTGGATCACtttatatacacagtatgttttgaatttttaacaatatgtactaaatatttatatacccATTTGTAACAGGGCtctgaatttaaataaatgccacATTGTATGGAAATGAACTTTATTGGATGTGGCTTCTGATTATTTCAGAGTCTCTTGCCATAATCACTGTAAAAAGATCTTATTTGAAGCTacttaataatgttaaaaactAAACTATCCAGTGCAATACTGCTAAATGGAAAGGCCATTTGtcttt
>XM_034314013.1
CCATGACCAAGTGAACGCTGCATGAGATACGAGCCCGCtaagtgggcgtggctttaTCGAACGTCAACAGGATTATGGATGAGAAAGAGCACAATGTCGGAGCCTTTGATCCAAGCATTCCTGAGGAGGGTCCTTCAGCGCCACCTGCAGGCTGGTTGGACAGTGTGACGGGCTACGAAGACCATAAAGGTGGAGATAGCACAGATCAGATCTACCCTCCTCCGCCTGACTTCATTCCTGAGCCGGAGAATGACAGGAACGTCTCCATCCCTAATGTGATGGTGCCTCAGGTGTCTGAAGATGTGGCCAGGGAGGCTTTGCTCAagtttgtggggaaaaaatggacaTACAGCAGCAAACCCGCCCAGAACCTTGTCTTCAAAGATTTGAAGCCTTTTACAGTGTATCGTTATCGCTTGGAAACATTTACAGAGTCAAGATCAAGTGCCTGGGAGCATGAGATATATAATGGTCAGTATGTGGACGGGCCGCAGTATGGCATCATCCCTCCTCCATGGCAAGTAGAAGTGCAATATCCACCCAAATTCACTGACACGGTCCAGAAAGTGCGTGTGCCTCACACCTCATCTGTAAAGCCTTGTCATCAGTGCCAGGGGAAAGGACGTGTGCGCTGTACACACTGCCATAGCAGAGGATGGATCAGCTGTATGTCCTGTCATGGCGCTATACACGGTAGGAACAGAAGATGCGTTGGCTGCCATGGAAGGGGAAGAAAAGTATGTACATGGTGCCATGGTAACGGTCATAAAACATGCCGCAAGTGTAATGGCCGTAAAAAGCTTTTGCATTTCATTCAGCTCACTGTCACATGGAAGAACCAAGTGTATGAGTTCATACCGGACCGGCTGCCTGATTTCCCCATAAAGAAGTTTGAGAAAGTGTCTGGGGAAGCATTCTTTATAGATGAAAGTCTCCtgGTCTATCCAATCGTAGGCTTCCCTGACAAGGAGATTTGCAATGCCTCTGAAGAAGCCATCCATGAGCACCTGAACAAATACTCCACTGTCAGTCGCATCTTGCAACAGCGACAGTCAGTAGAGCTGGTGCCTCTTACTCAAGCCTTCTACTCCTACAATGGCAAACACTATGACTATTTTGTTTATGGGACTGAAAAGAAGGTTCACACCACAAAATATCCAACTTCTTGCACTATCCTGTAGCATCTCATGCAATGTGAAAAAATTATTGtcacttttttattgttaaattctGGCTCCTGAGCAGTACATTACAGAGATTATAATAGCTTCTTTGTTATACGTCACCTTATTATTCTATGCATGATGTTAATAATATGTGCCAATGAAATGATTTGTCAGTTATAagaattataattatgtatgaatgaatgtttaaacatttctaATTGTATAGTGTAGgtttatattacataatacGTAAGTGTTGAgaatcattattaatattataaatcagTAATTCAGTCTAATGCCAAGTTGGATCACtttatatacacagtatgttttgaatttttaacaatatgtactaaatatttatatacccATTTGTAACAGGGCtctgaatttaaataaatgccacATTGTATGGAAATGAACTTTATTGGATGTGGCTTCTGATTATTTCAGAGTCTCTTGCCATAATCACTGTAAAAAGATCTTATTTGAAGCTacttaataatgttaaaaactAAACTATCCAGTGCAATACTGCTAAATGGAAAGGCCATTTGtcttt

Function

NR:

description
protein SSUH2 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932530.2 False 1803 mRNA 0.42 12 15045573 15061999
XM_034314012.1 True 1851 mRNA 0.42 13 15045571 15062000
XM_034314013.1 False 1734 mRNA 0.42 13 15045544 15062000

Neighbor

gene id symbol gene type direction distance location
LOC113538136 LOC108255245 coding upstream 5410 15029134 ~ 15040134 (+)
cand2 cand2,LOC107557972,LOC107691187,LOC107719941,LOC107720354,LOC107657311 coding upstream 21870 15012865 ~ 15023674 (+)
slc6a6b slc6a6,slc6a6b,LOC107719944,LOC107562730,LOC107676359 coding upstream 255695 14765186 ~ 14789849 (+)
LOC113537808 lsm3,LOC107676354,LOC107562728,LOC100705055 coding upstream 364683 14674490 ~ 14680861 (+)
podxl2 podxl2 coding upstream 383803 14630530 ~ 14661741 (+)
si:dkey-49n23.1 si:dkey-49n23.1,LOC108255172,LOC108436691,LOC107719940,LOC107571036 coding downstream 2877 15064877 ~ 15126398 (+)
dock3 dock3 coding downstream 76351 15138351 ~ 15368130 (+)
manf manf,LOC107592842,LOC107691893,LOC107750980,LOC106583751 coding downstream 313847 15375847 ~ 15382948 (+)
rbm15b rbm15b coding downstream 323294 15385294 ~ 15389128 (+)
nicn1 nicn1 coding downstream 801456 15863456 ~ 15877266 (+)
G308018 NA non-coding upstream 245402 14798973 ~ 14800142 (+)
G307997 NA non-coding upstream 264786 14699997 ~ 14780758 (+)
LOC113537908 NA non-coding upstream 282370 14760831 ~ 14763174 (+)
G307976 NA non-coding upstream 446932 14598393 ~ 14598612 (+)
G307971 NA non-coding upstream 456312 14589025 ~ 14589232 (+)
LOC113537967 NA non-coding downstream 331609 15393609 ~ 15407641 (+)
G308404 NA non-coding downstream 350099 15412099 ~ 15413822 (+)
G308707 NA non-coding downstream 812005 15874005 ~ 15875206 (+)
G308737 LOC105913228,LOC107592839,LOC107701594,LOC108431596,LOC107691887,LOC100331190 non-coding downstream 931395 15993395 ~ 15994043 (+)
G308758 LOC108280992,LOC108431596,LOC107756932,LOC107592839 non-coding downstream 959216 16021216 ~ 16022142 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other upstream 520568 14514592 ~ 14524976 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other upstream 568727 14179783 ~ 14476817 (+)
ippk ippk,LOC107755999,LOC106566243 other upstream 1352632 13674354 ~ 13692912 (+)
G306480 tuba1c,LOC103148207,LOC106920718,LOC102311436,LOC101065103 other upstream 2583008 12457601 ~ 12462536 (+)
G306103 NA other upstream 3529731 11515059 ~ 11515813 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other downstream 694890 15756890 ~ 15799890 (+)
amigo3 amigo3 other downstream 1427361 16489361 ~ 16501684 (+)
LOC113537865 LOC108280979 other downstream 2198979 17260979 ~ 17263663 (+)
snrpe snrpe other downstream 3625397 18687397 ~ 18692014 (+)
G310681 LOC108254836 other downstream 4025025 19087025 ~ 19087806 (+)

Expression


Co-expression Network