rpl29


Basic Information

Item Value
gene id rpl29
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 21542754 ~ 21545334 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932551.2
TCTTTTTGTGTTGAAGAAAGGCTTTTATTTCCCACAATCCATCCCTACTTCCTCTTCCGGTTGTCTCGCGCTACGTGTAGCAGACAGCGTGAATAAAAATGGCAAAGTCTAAgaaccacaccacacacaaccaGTCTCGCAAGTGGCACAGAAACGGCATTAAGAAGCCTCGCTCTCATCGCTACGAGTCTCTGAAGGGGGTGGATCCCAAGTTTCTGAGAAACATGCGCTTTGCCAAGAAACACAACAAGAAAGGGTTGAAGCAGCTCGCCAAGCAGCAAGCAACGAAATAAACAGATGCTGAACGATTTGTCTGTACAGATGTTGTTTATACCATCCACAATAAAACTTTAGAAAGTGGA
>XM_026932553.1
CTTTTATTTCCCACAATCCATCCCTACTTCCTCTTCCGGTTGTCTCGCGCTACGTGTAGCAGGTATCAAATTCACGTCTTCGCTTTTTTGACAGCGTGAATAAAAATGGCAAAGTCTAAgaaccacaccacacacaaccaGTCTCGCAAGTGGCACAGAAACGGCATTAAGAAGCCTCGCTCTCATCGCTACGAGTCTCTGAAGGGGGTGGATCCCAAGTTTCTGAGAAACATGCGCTTTGCCAAGAAACACAACAAGAAAGGGTTGAAGCAGCTCGCCAAGCAGCAAGCAACGAAATAAACAGATGCTGAACGATTTGTCTGTACAGATGTTGTTTATACCATCCACAATAAAACTTTAGAAAGTGGA

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02905 RP-L29e, RPL29; large subunit ribosomal protein L29e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932551.2 False 362 mRNA 0.45 4 21542754 21545334
XM_026932553.1 True 369 mRNA 0.45 4 21542775 21545334

Neighbor

gene id symbol gene type direction distance location
dusp7 dusp7,LOC107697567,LOC107677944 coding upstream 31756 21491890 ~ 21510998 (+)
poc1a poc1a,LOC107747840 coding upstream 59421 21443299 ~ 21483333 (+)
alas1 alas1 coding upstream 106930 21410776 ~ 21435824 (+)
lrp1aa LOC108281054,LOC108424569 coding upstream 171084 21211252 ~ 21371670 (+)
faim2b LOC108255062 coding upstream 393470 21137809 ~ 21149284 (+)
G311977 NA non-coding upstream 18857 21514471 ~ 21523897 (+)
G311972 NA non-coding upstream 57937 21484539 ~ 21484817 (+)
G311946 NA non-coding upstream 151661 21377860 ~ 21391093 (+)
G311665 NA non-coding upstream 351125 21191168 ~ 21191629 (+)
LOC117599907 NA non-coding upstream 357715 21166980 ~ 21185039 (+)
hnrnpa1a LOC108255131,LOC108424623,LOC107707363,LOC107551332,LOC107754559 other upstream 660389 20870652 ~ 20882365 (+)
znf740a znf740a,LOC108254942,LOC108424621,LOC107754560,LOC107551334 other upstream 682027 20807858 ~ 20860727 (+)
errfi1a errfi1 other upstream 1365482 20119383 ~ 20177272 (+)
si:dkey-264d12.5 LOC108254816 other upstream 1674273 19848467 ~ 19868481 (+)
vamp3 vamp3 other upstream 1758829 19768983 ~ 19783925 (+)

Expression


Co-expression Network