mfsd4aa (LOC108254837)


Basic Information

Item Value
gene id mfsd4aa
gene name LOC108254837
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 19042582 ~ 19059543 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932561.2
tttggaGACGGTGCTGGAGCTAAATAAAGtcggtgtggtgtggtgtgggaGGATGTGGTGGGAGGATCATGTTGATGCTTGAACACTTTCCAAACTCCAGCACTTTCACTCCGTCATGCGCGTGTCTGTGAGCGGCTGCGGCAGGTTCACGCACTGATGTAGGAGAGCGCGCGCACACGCCACGCCACGCCACGCCGCGCCGCGCGCGCAGAGCGATGAACCTGGACCGGAACTGTAACGTGGTGCAGAGTGTGGTGGGATCCCGCAGCTGCGCGCTGTTCCGCGGCCACTGGCAGCCCACGCTCACCTACTGGAGCGCCTTCTTCAGCTTCGGCCTGTGCCTGGCCCTGCTCGGCCCCACCGTGCTCGACCTGCGCTGCCAGACGCGCTCCAGCCTGCAGCAGGTCACTCTCGCCTTCTTCGCGCAGCAGCTCTGCCTGTTCGTGGGAAGCTTCGTGGGCGGTTTCTTCAGCAAGTCACTTTGCTCCTCTTTGTCATCCCTCGCTTCATCCACATTCATCATCTCACTGGTGTTCGCCTTCATTCCGCTATGCAGCAATTTGCTGATGCTGGTAGCTGCAATGGCTATTACAGGCCTGGCCATGGGCATCATCGATACCATCTCCAACCTGCAGCTGGTGAAGCTCTACCAGAAAGACTCCACTGTCTTCCTCCAGGTGCTCCACTTCTTCATTGGACTCGGGGCATTGCTGAGCCCCCTCATCGCTGACCCGTTTCTGTCTGAAACTGACTGCATCTTAGGAAACACCACCATCAATTCATCATCAACCATGAAACACTTGAGGAACACGCTATCTGGCAGACACCTACATAACGTGTCCCACATTCCTCTCCATACTGAAGGAGAAGTGGTGACCAAAGTGTCCTACGCCTTCTGGATCATGGCGTTCGTCAATCTTCCTGTGCCTATCGCCGTTCTGGTTCTAATGTATCGGGAGCGGCTGCTCCCATGTTGCCCTGAGCCCAGTCCTCGTCTCTTGGGTGGGGAGTCGCACTCGGATACAGTAAAGATGCAGAGAATCTCGGAGCAGGCTGACCTGAGCACGACCGAGCTGCACGAGCCTACAGGCCACATGGACATGCTAAACTGCTATCACCTCAGCAAGCTGAAAGGACTTCCGCCATCTTTCTTTGGGCTCCATGTCTTCGGAGGGATGGTGCTTTTCTTCTCCGATGGCATAGTGGGGTCATACACGGGTTTCATTTACACCTACGCAGTGGCTCCTCCCATGAGTCTATCGCACAAGATGGCGGGCTACCTGACCAGCGTGTTCTGGGCAGCCATCACAGTGGGGCGTCTGGCCTCCATACCGCTGTCTTACCGGGTCAAACCCGTTCGCCTGCTCATATTTAACCAGGTTGGAGTGATAGTGACTCAGTTGCTTCTGCTCATCCTCTACACGAACAGTGCCTTCCTCTTCATCGGTACCTGCTTTCTGGGTCTGTTTATCAGCAGTGTCTACCCGTGCATGCTGGCTTTCACGGAAGACCTCCTTGACTACAAAGGTTGTGCCACTACAGTCCTTGTGACCTCTGCTGGAATGGGAGAGATGCTTCTGCAGTTACTGGTGGGATCGatgatCAACACACACGGCAGTTACAGCTTCATGTTGTGTGGCATGATCTTTGGCTGCATGGGCTTCACACTCTTCCTGGCACTGCTTTTAGttcaacacagacacaaaaagtACTTAGCAGCTGCTTCCAATGCCATCCCTGTAGCAGAAAGGTCTGGGACTAACGAAGCTGAACACTGACTGACGACTGGCGCTACAGAGCCGGAGTCGGACCAAACGGACCAAGATGCTCGCAGTCTGAGACTGTGGCGTAGGAGGGAAGGGGACGAGACTGGATCATAGTCACTGGTTTGAGACAATCCTCAAAGCCTGAGAAGTGTCGGACCTTTCATAGAACTGTAGACCAAAGATGATTTGTCGTTGATTTGTGTGCATAAAGCAGGTAGATGTGTTGTAAGCCTGGGGAAATTGGGACCTTCACTTCTAGATTCTGCTGTCATTGCGAAAAGCAGAGAAAACCTTCCACTTTCCTCCTGTCTCGACATGCTTGGTATGCGAGTCGCGCTAAGACTTGTTTAAAGCTTATTTTCAATCTTCTGGAAAGCTAAATTTATACCATCACAGATTGCTTGTGATGTTTGCAACTGATTTCCTGAGCTGTAAATAATGAAACGGTGTAAATGAACAAATACAGCACTTTCAGTCCAGTTTAGTTGTAAATCTCACATTAGGAAataatgcactttttaaaaaagaataatcattatttttgtgGTTTAAGTTTCGAACAAGATGGCATTCATAATTtctgcttggaaaaaaaaaaaaggttaaaggGATTATAATGTCCAACCAGATGTAGGACAATCCAGCAATGCAGTGATTAAACTCGGATCAAACGTA
>XM_026932563.2
gagtttggaGACGGTGCTGGAGCTAAATAAAGtcggtgtggtgtggtgtgggaGGATGTGGTGGGAGGATCATGTTGATGCTTGAACACTTTCCAAACTCCAGCACTTTCACTCCGTCATGCGCGTGTCTGTGAGCGGCTGCGGCAGGTTCACGCACTGATGTAGGAGAGCGCGCGCACACGCCACGCCACGCCACGCCGCGCCGCGCGCGCAGAGCGATGAACCTGGACCGGAACTGTAACGTGGTGCAGAGTGTGGTGGGATCCCGCAGCTGCGCGCTGTTCCGCGGCCACTGGCAGCCCACGCTCACCTACTGGAGCGCCTTCTTCAGCTTCGGCCTGTGCCTGGCCCTGCTCGGCCCCACCGTGCTCGACCTGCGCTGCCAGACGCGCTCCAGCCTGCAGCAGGTCACTCTCGCCTTCTTCGCGCAGCAGCTCTGCCTGTTCGTGGGAAGCTTCGTGGGCGGTTTCTTCAGCAAGTCACTTTGCTCCTCTTTGTCATCCCTCGCTTCATCCACATTCATCATCTCACTGGTGTTCGCCTTCATTCCGCTATGCAGCAATTTGCTGATGCTGGTAGCTGCAATGGCTATTACAGGCCTGGCCATGGGCATCATCGATACCATCTCCAACCTGCAGCTGGTGAAGCTCTACCAGAAAGACTCCACTGTCTTCCTCCAGGTGCTCCACTTCTTCATTGGACTCGGGGCATTGCTGAGCCCCCTCATCGCTGACCCGTTTCTGTCTGAAACTGACTGCATCTTAGGAAACACCACCATCAATTCATCATCAACCATGAAACACTTGAGGAACACGCTATCTGGCAGACACCTACATAACGTGTCCCACATTCCTCTCCATACTGAAGGAGAAGTGGTGACCAAAGTGTCCTACGCCTTCTGGATCATGGCGTTCGTCAATCTTCCTGTGCCTATCGCCGTTCTGGTTCTAATGTATCGGGAGCGGCTGCTCCCATGTTGCCCTGAGCCCAGTCCTCGTCTCTTGGGTGGGGAGTCGCACTCGGATACAGTAAAGATGCAGAGAATCTCGGAGCAGGCTGACCTGAGCACGACCGAGCTGCACGAGCCTACAGGCCACATGGACATGCTAAACTGCTATCACCTCAGCAAGCTGAAAGGACTTCCGCCATCTTTCTTTGGGCTCCATGTCTTCGGAGGGATGGTGCTTTTCTTCTCCGATGGCATAGTGGGGTCATACACGGGTTTCATTTACACCTACGCAGTGGCTCCTCCCATGAGTCTATCGCACAAGATGGCGGGCTACCTGACCAGCGTGTTCTGGGCAGCCATCACAGTGGGGCGTCTGGCCTCCATACCGCTGTCTTACCGGGTCAAACCCGTTCGCCTGCTCATATTTAACCAGGTTGGAGTGATAGTGACTCAGTTGCTTCTGCTCATCCTCTACACGAACAGTGCCTTCCTCTTCATCGGTACCTGCTTTCTGGGTCTGTTTATCAGCAGTGTCTACCCGTGCATGCTGGCTTTCACGGAAGACCTCCTTGACTACAAAGGTTGTGCCACTACAGTCCTTGTGACCTCTGCTGGAATGGGAGAGATGCTTCTGCAGTTACTGGTGGGATCGatgatCAACACACACGGCAGTTACAGCTTCATGTTGTGTGGCATGATCTTTGGCTGCATGGGCTTCACACTCTTCCTGGCACTGCTTTTAGttcaacacagacacaaaaagtACTTAGCAGATAATGTTTCTAGCCCTCTGGCTAGCCTCTGAtccaatgagctgccttcagccaAATCATTTGcgtaaatgcatgtgattagcTGCGAAAGTGGATCTGATACAGAAGCTGCGATAGCAATGTTGAGAGAACGAGAGTTGAATGAACAACGGCGTTTTTAATAGCTTTAACGGCTCTGCAGCAGTATTTTTCGAGTGCTTGGTTCGGGCTGCTGAAATCCTTCGGTGCTGGTCTACCAGTTGACGACCGTTGCTTTCCAGAGAGATAAACTAAAGAACCTGTTGCCAGTACGTTATGCTGGTAAGGATGATGACACTGACACGGAAACCTTCAAATAGTTTTTTAT

Function

NR:

description
PREDICTED: major facilitator superfamily domain-containing protein 4-A-like

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932561.2 True 2441 mRNA 0.51 10 19042585 19059543
XM_026932563.2 False 2068 mRNA 0.53 10 19042582 19058802

Neighbor

gene id symbol gene type direction distance location
cdk18 cdk18,si:dkey-166c18.1,LOC108254840,LOC107654374,LOC107756627,LOC107698687 coding upstream 4914 18972962 ~ 19037668 (+)
si:ch211-112f3.4 LOC108254938 coding upstream 238680 18790926 ~ 18803902 (+)
LOC113537968 sox13 coding upstream 301025 18708742 ~ 18741557 (+)
kif17 kif17,LOC108438632 coding upstream 372123 18654169 ~ 18670459 (+)
sh2d5 sh2d5 coding upstream 388543 18646711 ~ 18654039 (+)
c20h1orf50 c21h1orf50,cunh1orf50,zgc:112255,LOC105895900,LOC107654415,LOC107654365,LOC107565729 coding downstream 278389 19337932 ~ 19343063 (+)
cdc42 cdc42,LOC103465423,LOC100691174,LOC101164400,LOC108248645,LOC107083933,LOC103386293,LOC100697482,LOC107395067 coding downstream 290205 19349748 ~ 19363983 (+)
LOC113538092 camta1 coding downstream 475868 19535411 ~ 19762252 (+)
per3 per3 coding downstream 728278 19787821 ~ 19809321 (+)
si:dkey-264d12.1 LOC108254813 coding downstream 756363 19815906 ~ 19834429 (+)
LOC117599928 NA non-coding upstream 78092 18914294 ~ 18964490 (+)
G310547 NA non-coding upstream 135959 18900260 ~ 18906623 (+)
G310446 NA non-coding upstream 233545 18738966 ~ 18809037 (+)
G310425 NA non-coding upstream 410638 18631715 ~ 18631944 (+)
G310421 NA non-coding upstream 425581 18616690 ~ 18617001 (+)
G310649 NA non-coding downstream 792 19060335 ~ 19066486 (+)
G310679 NA non-coding downstream 21991 19081534 ~ 19082121 (+)
G310680 NA non-coding downstream 22826 19082369 ~ 19085507 (+)
G310686 NA non-coding downstream 30839 19090382 ~ 19122056 (+)
G310703 NA non-coding downstream 50586 19110129 ~ 19113027 (+)
snrpe snrpe other upstream 350568 18687397 ~ 18692014 (+)
LOC113537865 LOC108280979 other upstream 1778919 17260979 ~ 17263663 (+)
amigo3 amigo3 other upstream 2540898 16489361 ~ 16501684 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other upstream 3242692 15756890 ~ 15799890 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other upstream 4517606 14514592 ~ 14524976 (+)
G310681 LOC108254836 other downstream 27482 19087025 ~ 19087806 (+)
svbp NA other downstream 435215 19494758 ~ 19498671 (+)
phf13 phf13 other downstream 448646 19508189 ~ 19517178 (+)
vamp3 vamp3 other downstream 709440 19768983 ~ 19783925 (+)
si:dkey-264d12.5 LOC108254816 other downstream 788924 19848467 ~ 19868481 (+)

Expression


Co-expression Network