ecm2 (ecm2,LOC107658384,LOC107586919)


Basic Information

Item Value
gene id ecm2
gene name ecm2,LOC107658384,LOC107586919
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 13705721 ~ 13721720 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932581.2
TACTGTACTGAAGAAGCCTCTTAGGCAAGTCCTGGCTTCGCTCAGAGTGCAGCCTTGTCTGTTTTAGACATTTATCAGCTCGGCAGCCGAGCAGACGCACACTGTCCTAGCGCTGCTGGCTAAGCCCACACAGCCTGGGAAAGGCGGAAATATTTGGCCTCGCAAAACTGcctgcaaaccactgACTTCCGTCATGAGACTATGGCTTTTACTTGCCGTGTCATTTTTCTGCTGGCTAAGCTACAGTGTTGCCAaagatcagaatcagaatcgtCCTGTGGCTCAAGGAAAACGAAGGAGGGGGAAGAAAATGGCCCATCAAGGCAGGGTGCCAGTAAATGGTGGATATAACGGAGCATCAGTTTTCATCGAGTCTTACAAAGGAGTAGAGGAACCAAAGCCGAACTACAATGTTATTCCAGGGAACACAGGGCAATGTGTATTTCAGGGCATCACTATGTTTGATAAAACCGTATGGTCACCGAAGCCCTGTGTCACCTGCTTATGCTCCAGTGGgaatgtggtgtgtgatgaaaTGAAGTGTCCAGTTTTACAATGCCAACTCAAATTTAAACCTATTGGACAGTGCTGCCCAATCTGCATTGACTCCACTCATGATGTCTCTGAAAACTCTGGCGATTCCCCTGTTCCTAATGATCCAAGCTTCCCTAATGCTGCGTTTCTGCCTGATAAGAgccagagaaaagagaaatacaaagaggaagaggagaggcaCTTGAGGAAAGATGCTGAGCGTAAGAGGAGAAAGAAGCAAAAGAAGGAGACAGAAAAACTGAGGAAACAAATGGAAGAGCAAGAGCGGGAGGAGGAAATGAGGAAGTTGAGAGAGGAAGCAGTGAAGAgagcagcagaagaagaagagaagaggaagaggatggaGGAACAACAGCGCGTGGAGGAAgataggaggaggaggagggagaaggAACAGAGGGAGATGCTGAGGGCTCTTGAGGAGGCAGCAGAGCAAGCACAGGCTGAACTGAgggcagaggaagaggaagatgaagaggaggaggaagaggagactGTGTTGTTAAGAGGGGACGTGTTCCAAATGCCACCACAGTTGCCTACCCCTCCAGACTTTCCCCCACCGACAGCACCAGCCGAGCCCAGTCACGCTGGAGAGGGAGATGATGCAGACGAGGAATCTGCACGGATTAGCTACGCACTCCCTCAGGGATGCACAATCTCTGATGTCATTGTCTCCTGTGAAAATGCCAAACTCACCAGTATTCCTCCTCTTTCCATCCCTGAGCTCAAGTCTCTCAATCTACAGGGAAACGCAATCACTACCATTCCAGCGGAAGCATTTAACGGTGTACTGAATTTGGAGTGGATagattttggaaaaaataaGATCTCATCATCTGGAATTGATCCACAAGCATTTACCAAGCTTAAATTTTTAACCCGGTTATATATGGATGGAAATTTGCTTGAACACATTCCCCCAAGGCTTCCACATACGCTTCAAGAATTAAAGCTCAAtgagaacaacctccaagagaTGGATGAGGACAGCTTTGAAGGTCTGAGCAGTCTGGTTACTTTGGAAATGGAAGGGAACTTACTGAGTGAAGCAAATGTAAATCCCAAATTCTTCGCACCACTGAAACAGCTCACCTACCTACGGATGGGCAGGAACCACTTCCGCACCATCCCGCAAGGCCTGCCAGCGTCTCTGCAGgagttgCATCTTGAAAACAATTTAATTGAGGAATTACCTGAGGGAGCTTTTAATCAAAGCAAAAGCCTCAACGTCATTGTGTTAAGACACAATAAAATAGATGAGACAAGGATTGCACCCTTTGCCTGGATCAATCACAGGAATCTGGAATCAATAGATCTCTCGCACAACAACCTCCATTTGGTCCCTTCATTCCTGCCAAAGTCCTTGGTTCACCTGGTGCTGGTCGGCAATCAGATCGAACGCATTCCAGGATATGTGTTTGCACACATGGAACCTGGCCTTGAGTATCTATATCTCTCCTACAACAAGCTGGATGGAGAAGGGGTGGAACCAGAGTCTTTCTTTGGTACATTTAACACAATGACTGAGCTATGTCTAGACCACAACCAACTGACCAGCATTCCCATTGGTGTCAACGAGATGACGTCATTACATTTCCTCAGgcttaacaacaacaacataagGCACATTGGAGAGGACAGTATCTGCGACCCCTTGAATGATGAGGATTCACACATAGTAGCCTTGCGCCTTGAGAATAATCTGCTTGATCCCCGGAAAATTCCTCCAACTGCCTTCTCATGTGTTAGGTCTTATTCTAGTGTTGTTTTGAGGCCTCAAAGAATTAAATAATCTGATAACGAAATCTTAAGCATGTTAATCTTTCTTAACACAATTGGCCTTGCGCCCAAACAAAGCTGAGAGAGgcaatgtaatgtaaatttCTCCAAACTCTCCATCCTGTTCCAAGTGTTTTGCATGAAGGTCACTGTTCAATATGTTGACTGTTTTATAAGACAAGGGCCTTTATTCATTAGCTATGCGAAATAAGGCATGGTTACTTGCTGGTATGTAGAGCATGTCAGCAGATGTCTGTGGTTATGGGGACCTATTTAGACTTTTAGTCTTTCTATGAATGCTAAATGGAAACATTTTACTTTCCAATTATTCAGTCAGGGAAAACGGCAGATCTGAAGATCCAAAACTATGTAAGGATATGATTCTGTTCACACcagtatttcattatttcagcatttctCATACATTTCCAGAGatcataaagaaaaatgtatagtttTACAATCAACCTACCAAGAATGTGTTTTACAATAAGTTTATTTGTACAGCTGCACATTACCATGAAGAACAAACCAAAAGATGATTACtactgaattaaaaagatgtaCTAGTGTCCTAATATTTTCACAGTATTCATAAGAGCTCTGGGGCATGAGTACATTTTCAGTTTCTGTGCATATAAACCACTCTCTACCATTCAAGGTTACATTTACCCCTTTGTCTGgatatgtatttaataatgtatttaataaagtaaAGCCTGATTTTACCTGCTA
>XM_026932582.2
ATACTGTACTGAAGAAGCCTCTTAGGCAAGTCCTGGCTTCGCTCAGAGTGCAGCCTTGTCTGTTTTAGACATTTATCAGCTCGGCAGCCGAGCAGACGCACACTGTCCTAGCGCTGCTGGCTAAGCCCACACAGCCTGGGAAAGGCGGAAATATTTGGCCTCGCAAAACTGcctgcaaaccactgACTTCCGTCATGAGACTATGGCTTTTACTTGCCGTGTCATTTTTCTGCTGGCTAAGCTACAGTGTTGCCAaagatcagaatcagaatcgtCCTGTGGCTCAAGGAAAACGAAGGAGGGGGAAGAAAATGGCCCATCAAGGCAGGGTGCCAGTAAATGGTGGATATAACGGAGCATCAGTTTTCATCGAGTCTTACAAAGGAGTAGAGGAACCAAAGCCGAACTACAATGTTATTCCAGCTCATGATGTCTCTGAAAACTCTGGCGATTCCCCTGTTCCTAATGATCCAAGCTTCCCTAATGCTGCGTTTCTGCCTGATAAGAgccagagaaaagagaaatacaaagaggaagaggagaggcaCTTGAGGAAAGATGCTGAGCGTAAGAGGAGAAAGAAGCAAAAGAAGGAGACAGAAAAACTGAGGAAACAAATGGAAGAGCAAGAGCGGGAGGAGGAAATGAGGAAGTTGAGAGAGGAAGCAGTGAAGAgagcagcagaagaagaagagaagaggaagaggatggaGGAACAACAGCGCGTGGAGGAAgataggaggaggaggagggagaaggAACAGAGGGAGATGCTGAGGGCTCTTGAGGAGGCAGCAGAGCAAGCACAGGCTGAACTGAgggcagaggaagaggaagatgaagaggaggaggaagaggagactGTGTTGTTAAGAGGGGACGTGTTCCAAATGCCACCACAGTTGCCTACCCCTCCAGACTTTCCCCCACCGACAGCACCAGCCGAGCCCAGTCACGCTGGAGAGGGAGATGATGCAGACGAGGAATCTGCACGGATTAGCTACGCACTCCCTCAGGGATGCACAATCTCTGATGTCATTGTCTCCTGTGAAAATGCCAAACTCACCAGTATTCCTCCTCTTTCCATCCCTGAGCTCAAGTCTCTCAATCTACAGGGAAACGCAATCACTACCATTCCAGCGGAAGCATTTAACGGTGTACTGAATTTGGAGTGGATagattttggaaaaaataaGATCTCATCATCTGGAATTGATCCACAAGCATTTACCAAGCTTAAATTTTTAACCCGGTTATATATGGATGGAAATTTGCTTGAACACATTCCCCCAAGGCTTCCACATACGCTTCAAGAATTAAAGCTCAAtgagaacaacctccaagagaTGGATGAGGACAGCTTTGAAGGTCTGAGCAGTCTGGTTACTTTGGAAATGGAAGGGAACTTACTGAGTGAAGCAAATGTAAATCCCAAATTCTTCGCACCACTGAAACAGCTCACCTACCTACGGATGGGCAGGAACCACTTCCGCACCATCCCGCAAGGCCTGCCAGCGTCTCTGCAGgagttgCATCTTGAAAACAATTTAATTGAGGAATTACCTGAGGGAGCTTTTAATCAAAGCAAAAGCCTCAACGTCATTGTGTTAAGACACAATAAAATAGATGAGACAAGGATTGCACCCTTTGCCTGGATCAATCACAGGAATCTGGAATCAATAGATCTCTCGCACAACAACCTCCATTTGGTCCCTTCATTCCTGCCAAAGTCCTTGGTTCACCTGGTGCTGGTCGGCAATCAGATCGAACGCATTCCAGGATATGTGTTTGCACACATGGAACCTGGCCTTGAGTATCTATATCTCTCCTACAACAAGCTGGATGGAGAAGGGGTGGAACCAGAGTCTTTCTTTGGTACATTTAACACAATGACTGAGCTATGTCTAGACCACAACCAACTGACCAGCATTCCCATTGGTGTCAACGAGATGACGTCATTACATTTCCTCAGgcttaacaacaacaacataagGCACATTGGAGAGGACAGTATCTGCGACCCCTTGAATGATGAGGATTCACACATAGTAGCCTTGCGCCTTGAGAATAATCTGCTTGATCCCCGGAAAATTCCTCCAACTGCCTTCTCATGTGTTAGGTCTTATTCTAGTGTTGTTTTGAGGCCTCAAAGAATTAAATAATCTGATAACGAAATCTTAAGCATGTTAATCTTTCTTAACACAATTGGCCTTGCGCCCAAACAAAGCTGAGAGAGgcaatgtaatgtaaatttCTCCAAACTCTCCATCCTGTTCCAAGTGTTTTGCATGAAGGTCACTGTTCAATATGTTGACTGTTTTATAAGACAAGGGCCTTTATTCATTAGCTATGCGAAATAAGGCATGGTTACTTGCTGGTATGTAGAGCATGTCAGCAGATGTCTGTGGTTATGGGGACCTATTTAGACTTTTAGTCTTTCTATGAATGCTAAATGGAAACATTTTACTTTCCAATTATTCAGTCAGGGAAAACGGCAGATCTGAAGATCCAAAACTATGTAAGGATATGATTCTGTTCACACcagtatttcattatttcagcatttctCATACATTTCCAGAGatcataaagaaaaatgtatagtttTACAATCAACCTACCAAGAATGTGTTTTACAATAAGTTTATTTGTACAGCTGCACATTACCATGAAGAACAAACCAAAAGATGATTACtactgaattaaaaagatgtaCTAGTGTCCTAATATTTTCACAGTATTCATAAGAGCTCTGGGGCATGAGTACATTTTCAGTTTCTGTGCATATAAACCACTCTCTACCATTCAAGGTTACATTTACCCCTTTGTCTGgatatgtatttaataatgtatttaataaagtaaAGCCTGATTTTACCTGCTA

Function

symbol description
ecm2 Predicted to enable collagen V binding activity and heparin binding activity. Predicted to be involved in extracellular matrix organization and positive regulation of cell-substrate adhesion. Predicted to be active in extracellular matrix. Is expressed in apical ectodermal ridge pectoral fin bud; fin fold pectoral fin bud; median fin fold; pectoral fin; and pharyngeal arch. Orthologous to human ECM2 (extracellular matrix protein 2).

NR:

description
extracellular matrix protein 2

GO: NA

KEGG:

id description
K08119 ECM2; extracellular matrix protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932581.2 True 3072 mRNA 0.44 10 13705722 13721720
XM_026932582.2 False 2884 mRNA 0.44 9 13705721 13721720

Neighbor

gene id symbol gene type direction distance location
si:dkey-42i9.4 LOC108254831,LOC108269908,LOC108431510,LOC108281067 coding upstream 34416 13669420 ~ 13671305 (+)
si:dkey-42i9.6 NA coding upstream 56456 13632105 ~ 13649265 (+)
nuf2 nuf2 coding upstream 76930 13617009 ~ 13628791 (+)
zgc:77375 LOC108254961,LOC108431553,LOC107700631,LOC107758152 coding upstream 99270 13589033 ~ 13606451 (+)
isy1 isy1,LOC108254962,LOC108431508,LOC107700632 coding upstream 118750 13579360 ~ 13586971 (+)
aspn aspn coding downstream 4140 13725860 ~ 13733282 (+)
omd omd coding downstream 23284 13745004 ~ 13748733 (+)
ogna ogn coding downstream 32248 13753968 ~ 13757523 (+)
nol8 nol8 coding downstream 54776 13776496 ~ 13792919 (+)
nisch nisch,LOC107593071 coding downstream 95135 13816855 ~ 13846632 (+)
G307161 NA non-coding upstream 181667 13522009 ~ 13524054 (+)
G307154 NA non-coding upstream 203890 13501466 ~ 13501831 (+)
G307079 NA non-coding upstream 355041 13350453 ~ 13350680 (+)
G306959 NA non-coding upstream 371476 13331687 ~ 13334245 (+)
LOC117599900 NA non-coding downstream 218706 13940426 ~ 13960190 (+)
G307272 NA non-coding downstream 281888 14003608 ~ 14003831 (+)
G307262 pdhb,LOC107721006 non-coding downstream 293442 14015162 ~ 14016394 (+)
G307293 rpp14,LOC103374991 non-coding downstream 330115 14051835 ~ 14058202 (+)
G307281 NA non-coding downstream 374550 14096270 ~ 14096786 (+)
ippk ippk,LOC107755999,LOC106566243 other upstream 12809 13674354 ~ 13692912 (+)
G306480 tuba1c,LOC103148207,LOC106920718,LOC102311436,LOC101065103 other upstream 1243185 12457601 ~ 12462536 (+)
G306103 NA other upstream 2189908 11515059 ~ 11515813 (+)
G305955 iqsec1 other upstream 2224621 11480669 ~ 11481100 (+)
G305869 NA other upstream 2379361 11325604 ~ 11326360 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other downstream 458063 14179783 ~ 14476817 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other downstream 792872 14514592 ~ 14524976 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other downstream 2035170 15756890 ~ 15799890 (+)
amigo3 amigo3 other downstream 2767641 16489361 ~ 16501684 (+)
LOC113537865 LOC108280979 other downstream 3539259 17260979 ~ 17263663 (+)

Expression


Co-expression Network