aspn (aspn)


Basic Information

Item Value
gene id aspn
gene name aspn
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 13725860 ~ 13733282 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932583.2
TTTGGCCAGGTTTCAAGCAGTGATGAGAAACATATGACCAGCAATATTATGTATTCAGCAGCAGTTAAGACTTGACTGACactgtgatcagtgtgtgatgtcttTTCACGCATAGCTCCTCTGGTCTTTTTATGTCCATTCAGGAACTCTTTTCagtgtattctttttttttcctcttgaacTTTTGTGCAGAAATTTGGGatcatcatacattttaatgttgctCCTGCAGGCTTTTGGAGCGTAACAAGGATAACACTTATTTCTCAGGCCCTAAACATCCTGACCTAATCTCCACAATGAGAGTGATTTTGTTGTTCACCTTACTTTTCCTGTGCCACGGAAAACCTTACAAGCCAATAAACATCATGGAGTTGATGAAGATTCATGACATCATGCAACAAGACAATGagattgatgatgatgacgatgatgacgacgacgatGATAATGATATTGAAGACAACTTTATTacagactgcccttttggctgCCAGTGTTTCAGAAGGGTTGTTCAATGTTCAGATCTAGgTTTGACATCAGTGCCACGTAACATTCCAGTAGACACGCTAATGATCGATCTGCAAAACAACGATATCACTGAAATCAAGGAGGAAGACTTTAAAAAACTGAGTCATCTCTATGCCTTGTTTCTGGTTAATAACCAGATTTCAAAGATTCATCCAAAGGCTTTCCAAAACATGGGGAAACTCCGTCTGCTCTACTTGTCATATAATCTCCTGACACAAATACCTGAAAATCTGCCAAAGAACATCTTGGAGCTAAGAATCCATGACAATAGGATCAACAGAATCCAAAAGGATGCATTTAAAGGGATGCAATTCTTGCATGTTCTAGAAATGAGCGCTAATCCTATTGCCAACAGTGGGATTGAACTAGGAGCTTTTAACGATATGGCGACGCTTTACCTGAGAATTGCAGAGGCAAGGCTCACAGCAATACCAAAAGATCTGCCCTCTTCTCTGACTGAGCTTCACTTGGACTATAATAAGATTGCTAAAGTGGAGGTGGAAGACTTTATCCGATACAAACATTTGCTGAGGCTGGGGTTGGCTTTCAACCAGATCAAATTTGTGGAGAATGGGAGCTTAGCATATATTCCTAAAGTCAGAGAAATTCATTTGGATAACAACAGGCTGAAAAATATTCCCCCAGGTTTGAACACGCTTAAGTATTTACAGGTGGTGTACCTCCATGCTAATAGCATTACCAGTGTGGGAGTGAATGACTTCTGCCCAACAAGAAGCAAGGTAAAGAAGGCTCTCTACTCAGGAATCAGCCTATTTGCCAATCCGGTGAAATACTGGCAGATCCAACCAGCCACCTTCCGCTGTGCATCTGGCCACAGAGCTCTGCAACTCGGCAATTTTAGACGAAAGTGAGCGCAGGGTTCCACTGGAGGGCAGCAGCTCAACTTATATTTGATTATGTCTTTCATTTAATACTTGGGATGTTAATCCCTCAGTCAGGTTGCACCGTACATCCACATCCACTGATGAACTAGTAGTTTACTTGAAAAACACCCTGTGAAGATAAATATGTAACAAAATATTCACCAGGCATTTTTGCTGGAAACTATTTAACCTGGTTTATTGGGACCACAGGTAATAGAGTAGCTACATTGGGTGCAATCATTGTTATAATCTGTTTATACCTTCATGCAGAATCAGTGGTACTGCTGAACTAAAGtcaaattttttaaactgtataatCAGACGTCGTTAGTAAACCTTAAATTGTTTCACTGTCATTATTATGGTAAAGGAACATGAAGTACTCAAGAGATACAATGCAGATCTCTAATGTAGACTAAGACTTGTAAACTATGAAATAAGCTACAGCCACAATTGTGTAAAACCTTTgttgaaatgtgtaaaaaaaaaagtgttttgtgaataaacagaaagaaaaaaattggtaGACCAAATGTTTCTGTCATCTACACCAATGGTAGATGAAAGAGCCATGCAAATGTATTAAGGGTGTGTCCCAAATGCTAGTGTTTAGAGATGAGTTCATTCACTATGTAGAAGACTTCATTTTAGTAAGCAACGTCATTAAAAAACTTGAGAAGTTA

Function

symbol description
aspn Predicted to enable calcium ion binding activity and collagen binding activity. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in axial vasculature; chondrocranium; and pharyngeal arch. Human ortholog(s) of this gene implicated in ankylosing spondylitis; degenerative disc disease; and osteoarthritis. Orthologous to human ASPN (asporin).

NR:

description
asporin

GO: NA

KEGG:

id description
K08120 ASPN; asporin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932583.2 True 2098 mRNA 0.39 8 13725860 13733282

Neighbor

gene id symbol gene type direction distance location
ecm2 ecm2,LOC107658384,LOC107586919 coding upstream 4140 13705721 ~ 13721720 (+)
si:dkey-42i9.4 LOC108254831,LOC108269908,LOC108431510,LOC108281067 coding upstream 54555 13669420 ~ 13671305 (+)
si:dkey-42i9.6 NA coding upstream 76595 13632105 ~ 13649265 (+)
nuf2 nuf2 coding upstream 97069 13617009 ~ 13628791 (+)
zgc:77375 LOC108254961,LOC108431553,LOC107700631,LOC107758152 coding upstream 119409 13589033 ~ 13606451 (+)
omd omd coding downstream 11722 13745004 ~ 13748733 (+)
ogna ogn coding downstream 20686 13753968 ~ 13757523 (+)
nol8 nol8 coding downstream 43214 13776496 ~ 13792919 (+)
nisch nisch,LOC107593071 coding downstream 83573 13816855 ~ 13846632 (+)
stab1 stab1 coding downstream 118938 13852220 ~ 13939822 (+)
G307161 NA non-coding upstream 201806 13522009 ~ 13524054 (+)
G307154 NA non-coding upstream 224029 13501466 ~ 13501831 (+)
G307079 NA non-coding upstream 375180 13350453 ~ 13350680 (+)
G306959 NA non-coding upstream 391615 13331687 ~ 13334245 (+)
LOC117599900 NA non-coding downstream 207144 13940426 ~ 13960190 (+)
G307272 NA non-coding downstream 270326 14003608 ~ 14003831 (+)
G307262 pdhb,LOC107721006 non-coding downstream 281880 14015162 ~ 14016394 (+)
G307293 rpp14,LOC103374991 non-coding downstream 318553 14051835 ~ 14058202 (+)
G307281 NA non-coding downstream 362988 14096270 ~ 14096786 (+)
ippk ippk,LOC107755999,LOC106566243 other upstream 32948 13674354 ~ 13692912 (+)
G306480 tuba1c,LOC103148207,LOC106920718,LOC102311436,LOC101065103 other upstream 1263324 12457601 ~ 12462536 (+)
G306103 NA other upstream 2210047 11515059 ~ 11515813 (+)
G305955 iqsec1 other upstream 2244760 11480669 ~ 11481100 (+)
G305869 NA other upstream 2399500 11325604 ~ 11326360 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other downstream 446501 14179783 ~ 14476817 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other downstream 781310 14514592 ~ 14524976 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other downstream 2023608 15756890 ~ 15799890 (+)
amigo3 amigo3 other downstream 2756079 16489361 ~ 16501684 (+)
LOC113537865 LOC108280979 other downstream 3527697 17260979 ~ 17263663 (+)

Expression


Co-expression Network