abhd6a (abhd6,abhd6a,LOC107657977,LOC105904082)


Basic Information

Item Value
gene id abhd6a
gene name abhd6,abhd6a,LOC107657977,LOC105904082
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 17086777 ~ 17100430 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932590.2
AATATCTAAGCTCTTGTAAGACAgaagctgaagtgtgtgtgcgcgcgcgagggcgcgtgagagagagagagagagagaaggcggAGGAATGGTCAGCTTCTGAAGAGAAACCCTGTCACACCTGAGAGACAGCTGAAGgTGAACTGCGGTGATGGATCTAAACGTGTTGAACATGTTCGTCATCGCTGGAGGCACTCTTGCAATCCCCATTTTAGCTTTCATGGCCTCTTTTCTGCTTTGGCCTGCAGCACTTATCAAGATTTATTACTGGTATTGGAGGAGGAGACTGGGGCTACAGGTGGATTATGCAGAGCATGATGGATATCGCTTCTGTTATACACACCGTGGGAAGCCCGGGAGTCGGCCATCTATACTCATGCTTCATGGCTTTTCTGCTCATAAAGACATGTGGCTGGGTGTGGTGAAGtTCTTTCCAACCAATGTGCATCTGGTGTGTGTTGACATGCCTGGCCATGAGGGCACTACACGCACTAGTGCGGTGGACTACTCCATTGAGGGCCAGGTCAAAAGGATACATCAGTTTGTAGAAAGTATTCAACTGAATAAGAAGCCTTTTCACCTGGTGGGTACATCCATGGGTGGTTGTGTAGCTGGGGTTTATGCTGCTCGCTATCCCTCAGATCTCTCCAGTCTCACACTGATCTGTCCTGCTGGTCTGAAATACCACAAGGAGAGTGAATTCGTGAGGCGTCTGAGAGACTTGGAGAACAGCAAGGATGTCCAAAGCATCCCTCTCATCCCGTCGACTCCAGAGGAGATGGAAGACATGCTGAAACTGTGCTCTTTTGTGCGCTTTAAGATTCCTCGTCAGatcCTTCAGGGATTGGTCAAAGTCCGTATTCCGCACAACAACTTCTACCGTGAGGTGTTCATGGAGTTAGTAAGAGAAAAATCGAGACACTGCCTGCATGAGAACATGCATCTCATTTCAACACCACTTCAAGTCATTTGGGGGAAGCAGGATCAGGTGCTGGATGTATCCGGTGCATCTGTGTTGGCTGATACTTTGCCCGGATGCCAGGTCGATCTGTTAGACAACTGTGGCCATTCTGTGGTGATGGAGCGTCCGCGGAAAGCTGCTCATCTCATCATGGACTTCATCACGCGTCAGCAGAATTCAGGCAGCGGTAGCAGCAAAAAGTTCTCTTGAAGCTATACAGTTCACAACAAGATTATATAATTTGTaagaaatttgtaaataatcttaaatgtatttttctagTGAACCCTCAGGGACAGATCACCAGGGTTAAATTCTCTCCTGTAGTATTTAAGATTTAGCAGAATTAGAATCAGAAACACTGTCGATTTTACTGTGAACTGGAAAAATAACAGgcaataatgttttaatgacaGTTTCAGGTTTTACCAATTCAGAAAATGCCcacaaaaaaatctattattaCTTTTCGGAAGAAAGGTCCTTCATTCTTTTAGGTAATAGTGAAACACTGCATGTGTCCCCCAGTTTTTAAAGCCTTCATTGTATGAAACAGCAtaatgttttaatctgtttggtATTACTTCTGTGTTAAAATCCACATTTTTTAAGCTAACACAAGTGCTGAAATGTAATGGTATATTATTAATTTCCATGTGAGATGCACTGCACTCCTACACAACATTGTTCTGAATATTTAGTAAAAGCACTGAAGCCATAACCCTAAACCTAGACACATTTATAATacaaaaaactctttttttttttttttttaaccagtcaTTTATATTGATTAGCCAGTTTACTAAGTACCTAGATTCAGTAACTATTTAAACACCTACCATTTAATATGTACCATACATgtaatgtaaattataaatttaatgtgCAGCTACTAGGTATGTGTACCTAGTAAACACCCTGAATATCTTCCTAGAGCAGCACtgttcttataccacagcaatttggcaattattacattacatttttatttattaaagaatgacacatataATACATGCTGGATGCAAGCTGGGCCAGATAACCTGAGGTCAAGATCAAACTGGGCAGTTTCGCTTCTTAAATCCACAGCACCTACAGCACGAGTCAAAGCAGTAACATCATATCAACACAGAGAGGGATTTATAGTTGCACCCACAACAGGCTTATAGTGAGCCTGTATATGGTTCTACACACAGAATGCTTCGTTATGAAGGATAAGCATCCCTAAAACAGAGCTCTGTCTTAGTGGCCAGGTAAGCGCGTGTCTCAGTCTGATGATTACTGTTCAAGGCTGGGTTCAGATGGGCCTTCAAcaacttaaaaataataataataattgtttttttttttttttatgagcacACATCTTTGTCGGTAATGGACGTGAAGTGGAGGATAATTCCCTccgtggggttgaggtctgacCTGGTATTATGACGAATGCAGGATTGAACAATCACGTGAATGCCTTTTATTTTGGACTGTGAACTTTAACTTTCCACTAATCACTACCACTAATCAGTGTAAAGGTGAATAaagatttaagatttatatTAGACCTTAACCTTTAGCTATTTTGtctgaataaatgttttaattgaa

Function

symbol description
abhd6a Orthologous to human ABHD6 (abhydrolase domain containing 6, acylglycerol lipase).
abhd6 Enables acylglycerol lipase activity. Involved in acylglycerol catabolic process. Predicted to be located in late endosome membrane and lysosomal membrane. Predicted to be integral component of membrane. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in GABA-ergic synapse; glutamatergic synapse; and mitochondrion. Predicted to be integral component of postsynaptic membrane.

NR:

description
monoacylglycerol lipase ABHD6

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K13700 ABHD6; abhydrolase domain-containing protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932590.2 True 2566 mRNA 0.41 9 17086777 17100430

Neighbor

gene id symbol gene type direction distance location
LOC113537900 LOC108254753 coding upstream 8728 17076546 ~ 17078049 (+)
LOC113537897 flnb,LOC107657976,LOC107712990 coding upstream 11133 17006607 ~ 17075644 (+)
slmapa slmap coding upstream 87958 16944464 ~ 16998819 (+)
LOC113537970 arf4,LOC108254967 coding upstream 173801 16910405 ~ 16912976 (+)
pde12 pde12 coding upstream 189663 16893231 ~ 16897114 (+)
LOC113538050 LOC108254737,LOC108281062 coding downstream 5436 17105866 ~ 17107916 (+)
LOC113537879 NA coding downstream 11113 17111543 ~ 17115161 (+)
LOC113538038 LOC108254738,LOC108254739,LOC108254741,LOC108254740 coding downstream 33457 17133887 ~ 17135114 (+)
LOC113537832 LOC108254739,LOC108254738,LOC108254741,LOC108431617,LOC108254742,LOC108254740 coding downstream 63342 17163772 ~ 17164608 (+)
her15.2 LOC108254744,LOC108254745,LOC108431592,LOC108431591 coding downstream 68580 17169010 ~ 17170004 (+)
G309208 NA non-coding upstream 70533 17015636 ~ 17016244 (+)
G309184 NA non-coding upstream 86753 16903181 ~ 17000024 (+)
G309389 NA non-coding downstream 71832 17172262 ~ 17184538 (+)
G309461 inpp1 non-coding downstream 144270 17244700 ~ 17248075 (+)
LOC117599872 NA non-coding downstream 176010 17276440 ~ 17277832 (+)
G309525 NA non-coding downstream 283358 17383788 ~ 17384010 (+)
G309933 rpl22,LOC100304536,LOC103047485,LOC106566811,LOC108414460 non-coding downstream 819106 17919536 ~ 18018096 (+)
amigo3 amigo3 other upstream 585093 16489361 ~ 16501684 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other upstream 1286887 15756890 ~ 15799890 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other upstream 2561801 14514592 ~ 14524976 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other upstream 2609960 14179783 ~ 14476817 (+)
ippk ippk,LOC107755999,LOC106566243 other upstream 3393865 13674354 ~ 13692912 (+)
LOC113537865 LOC108280979 other downstream 160549 17260979 ~ 17263663 (+)
snrpe snrpe other downstream 1586967 18687397 ~ 18692014 (+)
G310681 LOC108254836 other downstream 1986595 19087025 ~ 19087806 (+)
svbp NA other downstream 2394328 19494758 ~ 19498671 (+)
phf13 phf13 other downstream 2407759 19508189 ~ 19517178 (+)

Expression


Co-expression Network