LOC113537900 (LOC108254753)


Basic Information

Item Value
gene id LOC113537900
gene name LOC108254753
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 17076546 ~ 17078049 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932592.2
CTGAAGATCAGGCCTCTGATTGGGCGACCATAGGTGAAGCACGAATGACAAACTGCTCTTGGGTTTCCCTTTAACCAGAGTGAGAGACTCGGACCAGTGCACATTAACTCCAGCCTGAGAATGAGGACCTTCCTGACAACCCAGAACCAAAACAGCTACCGGGAGCTGATTATGAAGGAGGCGTACACACGGCTCAACTGGAAGATGAAATATGGCAAGGACTATCCGATCAGATTCGCCTCACGCAAATCCAAGCCCGTGAATCCGACGACTGCCCCTAAAGTCACGCTGCCCCCTGTAGTAAAAGCtccagagaagaagaaggaagccCCAGTGCTTCAGCGTGCTCTCAGTGAAGCTCCTCTGATGCGACCAGTCAGTCCTCAATCCAAAGAGACTCTTTATAATGGTTTATCCATAGAGGGCAAAGGACGCAGCCAATACCTGAAGATGCGCATACAGAAGATGCCTGAAGAAAGGTTTGACTACCCGCTATTGTCCTCATGGGAATATGGATGGAGATTAGGTGATTATGGGCATGAATACAAATCACCAGTTAATGGAAGATCAGCAGTTGTCAGGAGCACTTTCTATGCCAGGAACGGTATCTTTAATAGTCCCTCTGCAACAGATCACCTTGGGTGACCAACTTTCCAAAAAGACTGGATCACTCTATGAAGATAATTGCCACAGAAATGAATTTTCCACATAATGTCTACTAAATACCAAGAATTTGTACTTAATTATGCTGCAAAATGTTAGAAAATTAGCTGGATTACATTACAAAGTCTAAGTGTGGCTAAGAACTATTGATCCTGATGTATTAtaacaaaacactttttttttcttgttcaagTTCTCTGTAAAGGAATTATTCACATGCCATCAAGTGGGGATTAAATTAAAGGGAGGTGAAAGCAAGAACTTTGAAAACCAACACACTGTTCCCTAGCAACCACTAAACAAACACCTGGATTGTGCTAGTTTATAATTAACTTGCATCACCTTTGAAATAAAAGGCCTGAGGTTGCCTTTcttgggaagaaaaaaaaacaaaaaaacccaaaacactaGTTAGTATTGCTTCACTTTAATaatcatgaacataaacaaggTCAACATGTGACCTAAATGTTCACGTGACACCTGAATAGTCTTGAGTTACTGTATAGAGCAGCCcaagagaggtttttttttttttttttttttggaaaaaaaaaaaagaatgcatggTCCAGAAATGAAACTCGTCAGCATTTAGTCTGAGCTGCATTTATAGTAATGCATAGAGGAAAATGGTCGCTCACAGCCAAGGCCTAGGGAGAGGgaacaggaaaaacaaatgtgagtggtactactactactaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932592.2 True 1383 mRNA 0.41 2 17076546 17078049

Neighbor

gene id symbol gene type direction distance location
LOC113537897 flnb,LOC107657976,LOC107712990 coding upstream 902 17006607 ~ 17075644 (+)
slmapa slmap coding upstream 77727 16944464 ~ 16998819 (+)
LOC113537970 arf4,LOC108254967 coding upstream 163570 16910405 ~ 16912976 (+)
pde12 pde12 coding upstream 179432 16893231 ~ 16897114 (+)
atp6ap1la atp6ap1l,LOC108254970,LOC107680564 coding upstream 185238 16882002 ~ 16891308 (+)
abhd6a abhd6,abhd6a,LOC107657977,LOC105904082 coding downstream 8728 17086777 ~ 17100430 (+)
LOC113538050 LOC108254737,LOC108281062 coding downstream 27817 17105866 ~ 17107916 (+)
LOC113537879 NA coding downstream 33494 17111543 ~ 17115161 (+)
LOC113538038 LOC108254738,LOC108254739,LOC108254741,LOC108254740 coding downstream 55838 17133887 ~ 17135114 (+)
LOC113537832 LOC108254739,LOC108254738,LOC108254741,LOC108431617,LOC108254742,LOC108254740 coding downstream 85723 17163772 ~ 17164608 (+)
G309208 NA non-coding upstream 60302 17015636 ~ 17016244 (+)
G309184 NA non-coding upstream 76522 16903181 ~ 17000024 (+)
G309201 NA non-coding upstream 107109 16968396 ~ 16969437 (+)
G309194 NA non-coding upstream 157391 16917999 ~ 16919155 (+)
G309187 NA non-coding upstream 172289 16903857 ~ 16904257 (+)
G309389 NA non-coding downstream 94213 17172262 ~ 17184538 (+)
G309461 inpp1 non-coding downstream 166651 17244700 ~ 17248075 (+)
LOC117599872 NA non-coding downstream 198391 17276440 ~ 17277832 (+)
G309525 NA non-coding downstream 305739 17383788 ~ 17384010 (+)
G309933 rpl22,LOC100304536,LOC103047485,LOC106566811,LOC108414460 non-coding downstream 841487 17919536 ~ 18018096 (+)
amigo3 amigo3 other upstream 574862 16489361 ~ 16501684 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other upstream 1276656 15756890 ~ 15799890 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other upstream 2551570 14514592 ~ 14524976 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other upstream 2599729 14179783 ~ 14476817 (+)
ippk ippk,LOC107755999,LOC106566243 other upstream 3383634 13674354 ~ 13692912 (+)
LOC113537865 LOC108280979 other downstream 182930 17260979 ~ 17263663 (+)
snrpe snrpe other downstream 1609348 18687397 ~ 18692014 (+)
G310681 LOC108254836 other downstream 2008976 19087025 ~ 19087806 (+)
svbp NA other downstream 2416709 19494758 ~ 19498671 (+)
phf13 phf13 other downstream 2430140 19508189 ~ 19517178 (+)

Expression


Co-expression Network