cand2 (cand2,LOC107557972,LOC107691187,LOC107719941,LOC107720354,LOC107657311)


Basic Information

Item Value
gene id cand2
gene name cand2,LOC107557972,LOC107691187,LOC107719941,LOC107720354,LOC107657311
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 15012865 ~ 15023674 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932594.2
TATTTCAGCAATCTATTTATAACTATGTACAAGAGTCAGGTTTCTCAGTGTCATCTACCAGAGACAGACCCTTGAACCAGAAGATAGGGTCTTATtcatctaaaaaataataataatccctcTTTTTCACTGAACACCGACAAACCGACTGATTTCCGATTGTTCCGATTATTGGTGTTAGTATCTGAAGAGCTGAAATGTCGAATATCACCTACCACATTTCCAACCTGTTGGAAAAAATGACATCCACTGACAAAGACTTTCGGTTTATGGCCACCAATGATCTAATGATGGAGCTGCAAAAAGATTCCATAAAACTGGATGAGGACAGCGAGAGGAAAGTGGTGACCATGCTCCTGAAGCTCCTAGAGGACAAAAACGGGGAAGTTCAGAACCTGGCCGTCAAATGTCTTGGTCCTCTTGTGGGCAAAGTGAAGGAATATCAAGTGGAGACGATGGTGGACACATTATGCTCCAACATGGTGTCTGACAAAGAGCAGCTACGTGACATCTCCAGCATGGGGCTAAAGACGGTTATCGCAGAGCTGCCCCCACCAACTGCAGGTTTGTGTCTGACAGCTAACGTCTGTAAAAAGATCACAGCTCAGCTGATTGGTGCCATGGGAAAACAAGACGATGTGTCTGTACAACTAGAAGCCCTGGACATCCTTTCTGATATGCTAGGAAGGCTAAGCAGCACCTTAGTCGGTTTCCACCAGTCAATCCTGAGCAGTCTTCTTCCACAACTGACTAACCCTCGCATGGCGGTGAGGAAACGTGCCATTATGGCGCTTGGGCACCTGGTGCCCAGTAGTAGCCCTGCGATCTTCATGCAGCTCACTGAGCATCTCATGAGTGAATTGGCACGAGGAGCACCTGCTGCAAACACACGTACCTACATCCAGTGCCTTACCGCCATCAGCCAGCATGGAGGGCACAGAGTTGGGGAGCATCTGGAGAAGATTATTCCAATGGTGGTAAAGTTTTGCAATGTGGAAGATGACGAACTGAGGGAGAACTGCTTCCAGGCATTTGAAGCCTTTGTTCGCAAATGCCCCAAGGAAATGTCTCCTCACATTCCTATGGTAATTAGCTTGTGCCTGAAGTATGTCACCTATGACCCAAACTATAACTACGACGCAGAAGATGATCAGGAGGACTCCATGGATATTGAGGATAGAGGGGATGAAGACGAGGAGTCTGATGATGAatacagtgatgatgatgatatgagcTGGAAGGTAAGACGCTCATCAGCGAAGTGTCTGGAGGCGGTTATCAGCAACCGTAGAGACCTGCTGGTGGAACTTTATGGGAATGTGTGCCCTGTTCTGGTGTCACGTTtcaaagaaagagaggagaatgTCAAATCAGACATTTTCTTGGCCTTTGTGGCTTTGCTGCGGCAGACTAAACCCCCTCATAGCTCTGTTTTAGATCCTGGAACCAAGGAAGACCCTGCAGTTACCCTTTTGAAGAAACAGGTTCCCACAATAATAAAGGCCTTACACAAACAACTGAAGGAGAAAAGCATGAAATCCAGACAAGGCTGTTTCAGTATACTAACAGAGATAGCCATTGTGCTTCCTGGGTCATTAGGAGAGCACATTCCTGCCCTTATTCCAGGCATTGTGTACTCTCTCACAGACAAGTGTGCCTCCTCCAACATGAAGATTGATGCACTCTCCTTTCTCCATGTTCTGCTGTCTAGCCACACCCCAGAGGTCTTTCACCCACACATCAAAGTCATCCTGCCACCAGTAATTCACTGTGTTGAAGACCCTTTCTACAAAATCACATCTGAAGCCCTTCAAGTGACTCAGCAAATGGTCAAGATGATGCGCCCCTTAGATAAACCTTCTTCTTTTGATGCAAAGCCTTATGTTAAAGATATCTTCAGCTGTACCTTACAGAGGTTAAAAGCAACAGACATCGACCAGGAGGTGAAGGAGAGGGCCATTTCCTGCATGGCCCACATTGTCAGCCACTTGGGAGACCAGTTAGGAGGAGACCTGCAGCCCACCCTACAGATCTTTTTGGAAAGATTAAAGAATGAAATCACCAGGCTCACAGCAGTAAAGGCTTTATCCATCATTGCCACATCTCCACTTAAGATTGACATAAGACCTATCTTGACAGAAGGTATTCCAATTCTTGGATCGTTTTTACGAAAGAACCAACGTGCCCTTAAGCTAAACACACTAACAGCCCTGAATATCATTGTCACAAACTACAGTGACAGTTTCAAGCCAGCtttgatagagtctgtgttGAATGAATTACCTGCTTTGATTCAGGAGAGTGATATGCATGTTTCCCAAGTGGCTATCATGCTTGTCACATGTATGGCTAAATTTTGTCCAAGTTCTTTAGCCAAGATAGGAGGCACTATCTTGCCTGAAGTATATCACTTGGTCCATTCTCCACTGCTTCAAGGAGGTGCTCTTGGTTCCATCATTGAGTTCTTCCAAGTCCTGGTCTTGACCAAGGCCAGCAATACGGGGTACAATGATCTCATAAAAGCTTTGACTGGTCCTTTCTATAAGGCTAAATCAGCTGACTCCATGCCAGTCCATAGACAGTCCTATTACTCAGTTGCAAAATGTGTGGCAGCACTGTCTTCTGTATGTCCCAAAGAAGCTTCTGGAACAATTACCAATCTCACCCTAGAAGTGAAGAACCAGAAGACTGCAGAGTCTGTGAGGATCCTGTCATTTCTTTGTCTTGGGGAAGTCGGGCGTTCCATGAAGCTGGGTACTCACAAGGAGTTGAAGACCGTCATCATGGATGCTTTCAGTTCCCCAAATGAAGAGGTGAAATCTGCAGCATCATGTGCACTAGGCAATATCTGTGTGGGGAATCTAGATGAGTACCTACCATTCCTATTGAAAGAAATTGGTAGTCAGCCCAAGAGACAGTACCTACTTCTTCATTCACTAAAAGAAGTGATCAGTGCTTTATCAGTTGAGAGTCTCAAGCCTCATGTGGAGAGCATTTGGTCTCTGCTCTTCAAGAATTGTGAGTGTCCAGAAGAAGGTACTCGTAATGTTGTGGCAGAATGTCTAGGCAAACTCACACTGGTCAACCCATCTGAGCTTCTGCCCAGGCTTAAGAAGCAGTTATCCACAGGTTCCTCTCTTGCCCGTAGTACTGTTGTGACAGCTGTGAAATTCACTATTGTAGATCAACCTGTGCCCATAGACTCACTTCTTAAAGAAAGCATAGGTGATTTCCTAAAAACCATCCAGGATACAGACCTTAATGTACGACGTGTTGCTTTGGTGATGTTTAATTCCGCTGCTCACAACAAGCCTGGCCTGATACGCGGTCTTCTAACCACAGTTCTTCCAAACCTCTACAAGGAAACCCAAATTAGGAAGGAGCTCATTCGAGAGgTAGAGATGGGTCCCTTTAAGCATACAGTGGATGATGGGCTAGATGTGCGTAAAGCAGCCTTTGAATGCATGTATACTCTACTGGACAATTGCCTGGATTGTCTGGACATCTTCGAGTTCCTCAACCATGTAGAGGAAGGCCTAAAAGACCACTATGACATTAGAATGTTAACCTTCATCATGTTGGCTAGACTTGCCTCTTTGTGTCAGTCTGCTGTTGTCCAAAGGTTGGACCGTCTAGTGGAGCCCCTTAGAGCCACATGTACTACAAAGGTGAAGGCTGGCTCTGTTAAGCAGGAGTTTGAGAAACAGGAGGAGCTGAGGCGCTCAGCAATGCGTGCAGTGGCGGCTCTTCTGTCCATCAGAGACGTGGAGAAAAGCCCAGCAATGGCTGACTTTGCCACACAGATCAGAACCAATGCAGAGATGGCTACCATTTTTGAAAGTGTTCAGGGAGACCCCATATCAGGGGCTGTGGATTCAATGGACACTAGTTAGGTCTTCCAGCTATGAGTTTGCACTGTTGTGtgtatgaaattatttttaatagaaatgagTGGTCTTCTGTGCGCTAATGGTTTAGTATCACAATTTTGCTGATGAAGATTACAAGTTAATGCATAATTACCACACTGAATTTAGCTGTACACTCATGGTAGCAAAAACAAGTCTTCATTTACTATGGCAGCACAAGACTAAACTGACAACATTTTGCTTATACAAATTGGTTATGACTCAATAAAGCAATAAGCAAAATTTAGTAAAGACAGTAAAATTCATAAATTATACAGTAACCTAAACATGTTGGCTGTAGTGCACAAGCACCAGATTACACAACACCCAGTCAATGTACAGCTAGTTGTGAATGTCAGTTTAGTATGTAATGAATTGAACTGCCAACAGCAAGTGGTAAAGCCAGAGAaggtttataacacatttaagagagaagggggaagaaaaaaaa

Function

symbol description
cand2 Predicted to be involved in SCF complex assembly and protein ubiquitination. Predicted to be active in nucleus. Is expressed in myotome. Orthologous to human CAND2 (cullin associated and neddylation dissociated 2 (putative)).

NR:

description
cullin-associated NEDD8-dissociated protein 1-like

GO: NA

KEGG:

id description
K17263 CAND1, TIP120A; cullin-associated NEDD8-dissociated protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932594.2 True 4359 mRNA 0.45 15 15012865 15023674

Neighbor

gene id symbol gene type direction distance location
slc6a6b slc6a6,slc6a6b,LOC107719944,LOC107562730,LOC107676359 coding upstream 223016 14765186 ~ 14789849 (+)
LOC113537808 lsm3,LOC107676354,LOC107562728,LOC100705055 coding upstream 332004 14674490 ~ 14680861 (+)
podxl2 podxl2 coding upstream 351124 14630530 ~ 14661741 (+)
mcm2 mcm2,LOC107718478 coding upstream 384258 14616988 ~ 14628607 (+)
ccdc51 ccdc51 coding upstream 396971 14613763 ~ 14615894 (+)
LOC113538136 LOC108255245 coding downstream 5460 15029134 ~ 15040134 (+)
ssuh2.1 LOC108255262,LOC108436692 coding downstream 21870 15045544 ~ 15062000 (+)
si:dkey-49n23.1 si:dkey-49n23.1,LOC108255172,LOC108436691,LOC107719940,LOC107571036 coding downstream 41203 15064877 ~ 15126398 (+)
dock3 dock3 coding downstream 114677 15138351 ~ 15368130 (+)
manf manf,LOC107592842,LOC107691893,LOC107750980,LOC106583751 coding downstream 352173 15375847 ~ 15382948 (+)
G308018 NA non-coding upstream 212723 14798973 ~ 14800142 (+)
G307997 NA non-coding upstream 232107 14699997 ~ 14780758 (+)
LOC113537908 NA non-coding upstream 249691 14760831 ~ 14763174 (+)
G307976 NA non-coding upstream 414253 14598393 ~ 14598612 (+)
LOC117599878 NA non-coding upstream 422044 14583567 ~ 14590821 (+)
LOC113537967 NA non-coding downstream 369935 15393609 ~ 15407641 (+)
G308404 NA non-coding downstream 388425 15412099 ~ 15413822 (+)
G308707 NA non-coding downstream 850331 15874005 ~ 15875206 (+)
G308737 LOC105913228,LOC107592839,LOC107701594,LOC108431596,LOC107691887,LOC100331190 non-coding downstream 969721 15993395 ~ 15994043 (+)
G308758 LOC108280992,LOC108431596,LOC107756932,LOC107592839 non-coding downstream 997542 16021216 ~ 16022142 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other upstream 487889 14514592 ~ 14524976 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other upstream 536048 14179783 ~ 14476817 (+)
ippk ippk,LOC107755999,LOC106566243 other upstream 1319953 13674354 ~ 13692912 (+)
G306480 tuba1c,LOC103148207,LOC106920718,LOC102311436,LOC101065103 other upstream 2550329 12457601 ~ 12462536 (+)
G306103 NA other upstream 3497052 11515059 ~ 11515813 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other downstream 733216 15756890 ~ 15799890 (+)
amigo3 amigo3 other downstream 1465687 16489361 ~ 16501684 (+)
LOC113537865 LOC108280979 other downstream 2237305 17260979 ~ 17263663 (+)
snrpe snrpe other downstream 3663723 18687397 ~ 18692014 (+)
G310681 LOC108254836 other downstream 4063351 19087025 ~ 19087806 (+)

Expression


Co-expression Network