cnpy2 (LOC108255003)


Basic Information

Item Value
gene id cnpy2
gene name LOC108255003
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 20534127 ~ 20538632 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932618.2
GGTCCTTCAGAGATTCAGTCAGGCAGATCTTGGGGCAGCCCCGGACCGGTTGTCACGTCATCAGTTCCGAGTTATGGACCAGCGTGGAAGAACTGTGTATCACTGTGACTGAAAATTCAATAAAACTCAATAAAAGTGTGAACATGGCGAAGCTGCTGTATTTCCTCTCCCTGTGTGTTCTGCTGGCCTTCACCGTGGCAGTGCAAGGAGCCAGGCAGAGTCAGGACATCAGGTGTGGAGCATGCAGAGCGTTGGTGGATGAGATGGAATGGGCCATAGCACAGGTAGACCCCAAGAAAATGATCAAAACCGGTTCGTTCAGGATCAATCCCGATGGCAGCCAATCGACTAAAGACGTTCCGTTTGCGCGTTCAGAAGGCCATCTCCTCGAGCTGATGGAGAGGGTGTGTGAGAAGATGAAGGATTACGGCGAAACCTTGGATTCTGCTACAAATCGTAACGTGTACGTGAGGTTCATGGCACGCGAAGGCACGTCCCCGGACATTTCTAACGTCTCCTACGACTCGAGAGTCACGGCCGACTTAAAGTTCGCTTGTGAAGCGATCGTGGAGCAGCACGAGGACGAAATTATCGAATTCTTCTCTCATGAGACGGACAACGTTAAAGACAAACTCTGCAGCAAGAGAACAGATCTGTGTGACCACGCGCTGAAGATACCTCACGATGAGCTTTAACATCGACATCACAGGCATTCATATTCTAACATCACGTCACGTGCAGTGGGATTAGATTTGAACTTTTAGCACGGATTAAACGGAGACgtttcagatttatttcaaaCAGGCTTCAGATGTACATTTGATGAATCTGGTTTTGtgcagattgtgtgtgtgtgtgtgtgtgtgtgttcgggtTCAGCCTTCAGCGCTGTAAACACACGGCTCACACTGATGCTCGTCTAATCATGATGCTGAAACTGCCTCAAGAGGAACGTGTGACCATCCACACACAGTTTAccgctttgtgtgtgtgtgtgtatcatgagCCACGAAGCCATCCTGAGGAATTACTCCCATCTGATCGATGTTCTTTCTCTCCACTTGTCTAACAGCATTAAAATATGCATCATATGCAGGATGTAAAACTCTTGTTTagatctattttatttttattccctGTTATTTAACGTCACATGCGTCTCTGTGCCTGTTTGTGACTTTTCTCCGTCCAGAGATCCAGATTTTGTACAACTTAACGCTCTTGTGTTTCCTGTGTGACGTTTTTGTCacttgtctgtctttttttttgataaacatGTTTTCACAA

Function

NR:

description
protein canopy homolog 2-like

GO: NA

KEGG:

id description
K22936 CNPY1_2; protein canopy 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932618.2 True 1287 mRNA 0.46 6 20534127 20538632

Neighbor

gene id symbol gene type direction distance location
nab2 LOC108255101,LOC108431520 coding upstream 26943 20495896 ~ 20507184 (+)
akr7a3 akr7a3,LOC108255199,LOC108431624,LOC108431625,LOC107706545,LOC102201483 coding upstream 68577 20458293 ~ 20465550 (+)
kcnab2a kcnab2a,kcnab2,LOC106513833,LOC108431628,LOC108255041,LOC100709904,LOC107385277,LOC108231619,LOC103136366,LOC106923773,LOC102294726,LOC103385628,LOC107712982,LOC107657983,LOC107582417,LOC107592856 coding upstream 148468 20288994 ~ 20385659 (+)
park7 park7,LOC107657982,LOC107701995 coding upstream 245373 20278572 ~ 20288754 (+)
pax7a pax7,pax7a,LOC108255053,LOC103136430 coding upstream 296724 20179908 ~ 20237403 (+)
ankrd52b ankrd52,LOC108255001 coding downstream 8260 20546892 ~ 20576360 (+)
LOC113538122 LOC108255274 coding downstream 58120 20596752 ~ 20603064 (+)
LOC113537838 NA coding downstream 79659 20618291 ~ 20621239 (+)
si:ch73-267c23.10 LOC108255296 coding downstream 95118 20633750 ~ 20650173 (+)
slc2a10 slc2a10 coding downstream 115553 20654185 ~ 20661689 (+)
G311471 NA non-coding upstream 12319 20519861 ~ 20521808 (+)
G311446 NA non-coding upstream 58440 20473896 ~ 20475687 (+)
G311447 NA non-coding upstream 60330 20472823 ~ 20473797 (+)
G311414 NA non-coding upstream 117948 20415584 ~ 20416179 (+)
G311407 NA non-coding upstream 137841 20395754 ~ 20396286 (+)
G311460 NA non-coding downstream 5389 20544021 ~ 20544553 (+)
G311444 NA non-coding downstream 41321 20579953 ~ 20583595 (+)
G311515 NA non-coding downstream 124136 20662768 ~ 20665745 (+)
G311516 NA non-coding downstream 127635 20666267 ~ 20668273 (+)
G311507 NA non-coding downstream 144199 20682831 ~ 20685069 (+)
errfi1a errfi1 other upstream 356855 20119383 ~ 20177272 (+)
si:dkey-264d12.5 LOC108254816 other upstream 665646 19848467 ~ 19868481 (+)
vamp3 vamp3 other upstream 750202 19768983 ~ 19783925 (+)
phf13 phf13 other upstream 1016949 19508189 ~ 19517178 (+)
svbp NA other upstream 1035456 19494758 ~ 19498671 (+)
znf740a znf740a,LOC108254942,LOC108424621,LOC107754560,LOC107551334 other downstream 269226 20807858 ~ 20860727 (+)
hnrnpa1a LOC108255131,LOC108424623,LOC107707363,LOC107551332,LOC107754559 other downstream 332020 20870652 ~ 20882365 (+)

Expression


Co-expression Network