ccdc66


Basic Information

Item Value
gene id ccdc66
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 16672820 ~ 16687543 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932620.2
TACAGGAGGAGTATTAATTacataccctatgtagtgcacttggaTAGGAGTCAGGGCGCTGTTTGGAATTGAGCCAGAGCGACGGTTATCCAAACACCGGTGTAGGTTGTTTGTAGCAACCGGAGTAGCGACACGACGGCTTAACAACACTTTATGAATTTGGTGTTTATAAATATTACTGTCTTTTATGAAGCTCAATGTGTGcagaattaaataatgaatctgGGtgaTGGCCTGATGTTTGAACTTGAGAATGGGAAGCCCAAGCTTGTGTTAGCCCACTATgGTGAGTCAAAGGCCTCCAGCAAAATGGGATTTTGTCAAGTCCCTCAGAAGAACAGACCAGCGAAAGCCGCAGCCACCTCCAAACAGGGTCCTAAAGAAGAGGAAAGatggcagagagacaggaagtgccGAGATGCTGGAGGTGTCAATCACGCTGTCAATGGCCGAAAGACCAAAGTGAAGAGCAGGACTGATCACTGCAGCATCATTGGGGTGGTCAGGCTGCAGTCAGAGAGCAAAACCAAGTCCACCAATGAAACGTCCAATGTCACAGAGAAGACTGTAAAGGAGAGCTTAGTGTGTTTAACTCAAGAACAACTTCAGCAGATCCTCAGCAGCATCAAGGCGTCAGGGCAAAATGTCCAAGACGACTCTACAGCTCACAACCAGAATGGAGCAGCTACAAAGGAGGAAGAAAGTGAAACAGTGACTAGTGTAACTGGAAAGGACCAACAAATAAACTCACAAAGAAATGAGGAAAAAACCCTGAGTGATTCCACCCCAGCAGGCCTGTTCAGCACTTTTGGAGAACGTGAGCAGAAGAGAGACAAGCTCAAGGCTAAAAAAGCACAATGGAGAAGAGAGCTAGACGAGCAGATGGCACTTAAAAAGCAGCAGAAAGAGAGCGCAGAGGTTCTGGCTCATAGTGATCAACGGAGAGGCACGGAAGCTGGACCGAGATCAGGTGACCAGCTCTCAGCGGTGCAAGAGGACAGAATAAAACAGCCTGGCACAGAAATCGCAAATAACCGGCCACCAGCTCCTCAGACACACAGCAATCCAAAGCCTCTTCCGTCTGCTATCCGCTCAGCGTTTGTACTGGGGGAAGCTGTGCCACTGGAGCGGGCATTCagtgaagagaagaaagagcagCAGAGACGCTGGTTGCAGGACATAgagcagcagagagaggaaaccaAACTGCGCAGGAAGCTGGAGAAACAGAGCCAGAGCCAGGCAGAGGATCACGATCGCTGGGCCATGCACTTTGACTCGTTTCAGCGGCGTCTCCCAGTACAGCCTCCTTCCGCTGCAGAGCTCGATGTGGGCAGCTCCCTCTCCCATCACCGCTCCCCCTCTCAGGCTCTATCCACTGCCTGGGAGGCCATGAGCGCATATGGAGGGGACAGTATGGGCAGAGCCAGTGTGGACACCACTCAGGGCTTTCAGCCGAAGTCAAGCTACCTGCGTACCATGACAGCACTGCTAGATCCAGCTCagatagaggagagagagaggaagcgtGTGAAACAGCTCGAACATCAGCGAGCTATCGAGGCTCAGGTGGAGGAGCGGAGgcgacagaaagagaaagaagcagcTACTCGGCAAGCCatggagcaggaggaagagCGCCGAATCGCTAAAGAGAGGGAACTTCTGCAGCAGCAGTACCTGAGAGACACTCAGctacagagacaaaaagagGAGTTACAGTCACGCAAAACAGAGGAGCTGTATCTGAGTGTGCAGAGGGCatcagaggaagcacagaaagacaaacaccTACAGAGAATTAGAGACCTGGTGAAGAAAGGCCATGATGTTTCTAACCTGTTGCGGAGTGAAACTACCTCACAGGCATTGACCGGTCAAGGTTCAGAGAGTTTGACTACATTGGACACCATAACAGAGGCTCCACACACAGCCAAGAAAGACACCGCAGTTCAGACAGaaataaatcCAGGTAGCCCATTCCCTGAGACCAACGGAGGCATTCAAACTACAGTTGAGTACAAGGCTCCTCCTGATATTAAAAGATCCAGACGTGAAGCCAGGCTGGTCGAAAAGAACAGTGGAAAGGAGAACATGTGCATGGCCATCAAAGGAGGAGATCCTTACGAAGCCTATGCCCGAACAGACCGAAACCAGGGACAACAGCAGCTCCTCAGGAGACCAGAGTGGAACACACAGAGGCCCGGGAAGGCGTTTGTTCCTGCGTCAGAGCGTTACCCTGCCGCCCTGCAGAGGCACAGGCAGGAGAACAGGATGCGCAGGCAGATGGAGCTCATGACCTTGGTGGAGCGGAACACACTTTCCAGAACGCCACAGCAAGCAATGCCTGCACGTTCTGGAAATCCATCTCGCATTCAGCGGCACTCGAACTCAGCTCATCAGAAAGATGGGGATTCACATAGAGTACAATCTGTCAGTCAAAACAGAGTTTCCTCGCCTCCCGTCCCTGCCGTGAAGCACAGGCTCCAGCTTCTTCCTCCATCCTGTGCAGGGGAACAGTCAGAGAGCTGTGGATGGCCTCCATCATCTGATTATGTCCCATACGTGCGCACAGACGAGGTTTATCACCTGGATCCTCTTGCCCCAATCTCCAGACCCGCCACACACGAAGGAACACAGAAGATACATTCAGATGTGAGCAGCAGCAGACAGCACACCCCTCTGGTGCAGCGGGATCCTCTCCTACACCCTGAGCTGCtgaagagcacagagagacagcaagctATTCTCAAAGGCTTGTCTGAACTCAGACAGGGCCTGctgcagaaacagagagagctAGAAACCAGCCTAAGTCCTTTACTGCAGGGGCAAAGCAGAACCCACTCACCAGCTTTCCAGCCCCCATGAGAGAACCACAAATTTCCATTCAGAGTATGATATACACCAGCACTTTACTGtccacagtgaacacacactatGGATCCGAATGATTTCATTTCTGCAGCACCTACTGCAAATTACACATGCACTTTTCATTGACCGGGGTTGTTTTTAAACAGTTCCTAAAGGTAAATACCTATTTCTCTTTATGCTGATGTACTGAATTTAGCTGAACTGATAATTAGTGTGGTTAATTTTATTGGTTAAGGTATTATTTATTGGGTTGCTAATTATGACTGTGTTCACTTGAACTGCATTTATGACTTGATGAATTTGATGGTGAATTTCTCACCATTTTCAACCAGGTACTTTAAGGTTTTAATGTGAATTAAAGTATTTTTGACTTTGGTAAA
>XM_026932622.2
TACAGGAGGAGTATTAATTacataccctatgtagtgcacttggaTAGGAGTCAGGGCGCTGTTTGGAATTGAGCCAGAGCGACGGTTATCCAAACACCGGTGTAGGTTGTTTGTAGCAACCGGAGTAGCGACACGACGGCTTAACAACACTTTATGAATTTGGTGTTTATAAATATTACTGTCTTTTATGAAGCTCAATGTGTGcagaattaaataatgaatctgGGtgaTGGCCTGATGTTTGAACTTGAGAATGGGAAGCCCAAGCTTGTGTTAGCCCACTATgGTGAGTCAAAGGCCTCCAGCAAAATGGGATTTTGTCAAGTCCCTCAGAAGAACAGACCAGCGAAAGCCGCAGCCACCTCCAAACAGGGTCCTAAAGAAGAGGAAAGatggcagagagacaggaagtgccGAGATGCTGGAGGTGTCAATCACGCTGTCAATGGCCGAAAGACCAAAGTGAAGAGCAGGACTGATCACTGCAGCATCATTGGGGTGGTCAGGCTGCAGTCAGAGAGCAAAACCAAGTCCACCAATGAAACGTCCAATGTCACAGAGAAGACTGTAAAGGAGAGCTTAGTGTGTTTAACTCAAGAACAACTTCAGCAGATCCTCAGCAGCATCAAGGCGTCAGGGCAAAATGTCCAAGACGACTCTACAGCTCACAACCAGAATGGAGCAGCTACAAAGGAGGAAGAAAGTGAAACAGTGACTAGTGTAACTGGAAAGGACCAACAAATAAACTCACAAAGAAATGAGGAAAAAACCCTGAGTGATTCCACCCCAGCAGGCCTGTTCAGCACTTTTGGAGAACGTGAGCAGAAGAGAGACAAGCTCAAGGCTAAAAAAGCACAATGGAGAAGAGAGCTAGACGAGCAGATGGCACTTAAAAAGCAGCAGAAAGAGAGCGCAGAGGTTCTGGCTCATAGTGATCAACGGAGAGGCACGGAAGCTGGACCGAGATCAGGTGACCAGCTCTCAGCGGTGCAAGAGGACAGAATAAAACAGCCTGGCACAGAAATCGCAAATAACCGGCCACCAGCTCCTCAGACACACAGCAATCCAAAGCCTCTTCCGTCTGCTATCCGCTCAGCGTTTGTACTGGGGGAAGCTGTGCCACTGGAGCGGGCATTCagtgaagagaagaaagagcagCAGAGACGCTGGTTGCAGGACATAgagcagcagagagaggaaaccaAACTGCGCAGGAAGCTGGAGAAACAGAGCCAGAGCCAGGCAGAGGATCACGATCGCTGGGCCATGCACTTTGACTCGTTTCAGCGGCGTCTCCCAGTACAGCCTCCTTCCGCTGCAGAGCTCGATGTGGGCAGCTCCCTCTCCCATCACCGCTCCCCCTCTCAGGCTCTATCCACTGCCTGGGAGGCCATGAGCGCATATGGAGGGGACAGTATGGGCAGAGCCAGTGTGGACACCACTCAGGGCTTTCAGCCGAAGTCAAGCTACCTGCGTACCATGACAGCACTGCTAGATCCAGCTCagatagaggagagagagaggaagcgtGTGAAACAGCTCGAACATCAGCGAGCTATCGAGGCTCAGGTGGAGGAGCGGAGgcgacagaaagagaaagaagcagcTACTCGGCAAGCCatggagcaggaggaagagCGCCGAATCGCTAAAGAGAGGGAACTTCTGCAGCAGCAGTACCTGAGAGACACTCAGctacagagacaaaaagagGAGTTACAGTCACGCAAAACAGAGGAGCTGTATCTGAGTGTGCAGAGGGCatcagaggaagcacagaaagacaaacaccTACAGAGAATTAGAGACCTGGTGAAGAAAGGCCATGATGTTTCTAACCTGTTGCGGAGTGAAACTACCTCACAGGCATTGACCGGTCAAGGTTCAGAGAGTTTGACTACATTGGACACCATAACAGAGGCTCCACACACAGCCAAGAAAGACACCGCAGTTCAGACAGaaataaatcCAGGTAGCCCATTCCCTGAGACCAACGGAGGCATTCAAACTACAGTTGAGTACAAGGCTCCTCCTGATATTAAAAGATCCAGACGTGAAGCCAGGCTGGTCGAAAAGAACAGTGGAAAGGAGAACATGTGCATGGCCATCAAAGGAGGAGATCCTTACGAAGCCTATGCCCGAACAGACCGAAACCAGGGACAACAGCAGCTCCTCAGGAGACCAGAGTGGAACACACAGAGGCCCGGGAAGGCGTTTGTTCCTGCGTCAGAGCGTTACCCTGCCGCCCTGCAGAGGCACAGGCAGGAGAACAGGATGCGCAGGCAGATGGAGCTCATGACCTTGGTGGAGCGGAACACACTTTCCAGAACGCCACAGCAAGCAATGCCTGCACGTTCTGGAAATCCATCTCGCATTCAGCGGCACTCGAACTCAGCTCATCAGAAAGATGGGGATTCACATAGAGTACAATCTGTCAGTCAAAAAGTTTCCTCGCCTCCCGTCCCTGCCGTGAAGCACAGGCTCCAGCTTCTTCCTCCATCCTGTGCAGGGGAACAGTCAGAGAGCTGTGGATGGCCTCCATCATCTGATTATGTCCCATACGTGCGCACAGACGAGGTTTATCACCTGGATCCTCTTGCCCCAATCTCCAGACCCGCCACACACGAAGGAACACAGAAGATACATTCAGATGTGAGCAGCAGCAGACAGCACACCCCTCTGGTGCAGCGGGATCCTCTCCTACACCCTGAGCTGCtgaagagcacagagagacagcaagctATTCTCAAAGGCTTGTCTGAACTCAGACAGGGCCTGctgcagaaacagagagagctAGAAACCAGCCTAAGTCCTTTACTGCAGGGGCAAAGCAGAACCCACTCACCAGCTTTCCAGCCCCCATGAGAGAACCACAAATTTCCATTCAGAGTATGATATACACCAGCACTTTACTGtccacagtgaacacacactatGGATCCGAATGATTTCATTTCTGCAGCACCTACTGCAAATTACACATGCACTTTTCATTGACCGGGGTTGTTTTTAAACAGTTCCTAAAGGTAAATACCTATTTCTCTTTATGCTGATGTACTGAATTTAGCTGAACTGATAATTAGTGTGGTTAATTTTATTGGTTAAGGTATTATTTATTGGGTTGCTAATTATGACTGTGTTCACTTGAACTGCATTTATGACTTGATGAATTTGATGGTGAATTTCTCACCATTTTCAACCAGGTACTTTAAGGTTTTAATGTGAATTAAAGTATTTTTGACTTTGGTAAA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932620.2 True 3257 mRNA 0.50 19 16672820 16687543
XM_026932622.2 False 3254 mRNA 0.50 19 16672820 16687543

Neighbor

gene id symbol gene type direction distance location
nicn1 nicn1 coding upstream 795554 15863456 ~ 15877266 (+)
rbm15b rbm15b coding upstream 1283692 15385294 ~ 15389128 (+)
manf manf,LOC107592842,LOC107691893,LOC107750980,LOC106583751 coding upstream 1289872 15375847 ~ 15382948 (+)
dock3 dock3 coding upstream 1304690 15138351 ~ 15368130 (+)
si:dkey-49n23.1 si:dkey-49n23.1,LOC108255172,LOC108436691,LOC107719940,LOC107571036 coding upstream 1546422 15064877 ~ 15126398 (+)
atp6ap1la atp6ap1l,LOC108254970,LOC107680564 coding downstream 194459 16882002 ~ 16891308 (+)
pde12 pde12 coding downstream 205688 16893231 ~ 16897114 (+)
LOC113537970 arf4,LOC108254967 coding downstream 222862 16910405 ~ 16912976 (+)
slmapa slmap coding downstream 256921 16944464 ~ 16998819 (+)
LOC113537897 flnb,LOC107657976,LOC107712990 coding downstream 319064 17006607 ~ 17075644 (+)
G309056 NA non-coding upstream 77470 16595137 ~ 16595350 (+)
G308915 NA non-coding upstream 366817 16305796 ~ 16306003 (+)
G308827 NA non-coding upstream 552531 16119831 ~ 16120289 (+)
G308822 NA non-coding upstream 559813 16112799 ~ 16113007 (+)
G308810 NA non-coding upstream 570979 16101612 ~ 16101841 (+)
G309135 rps23,LOC106566095 non-coding downstream 109588 16797131 ~ 16882513 (+)
G309170 NA non-coding downstream 174603 16862146 ~ 16864645 (+)
G309184 NA non-coding downstream 215638 16903181 ~ 17000024 (+)
G309187 NA non-coding downstream 216314 16903857 ~ 16904257 (+)
G309194 NA non-coding downstream 230456 16917999 ~ 16919155 (+)
amigo3 amigo3 other upstream 171136 16489361 ~ 16501684 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other upstream 872930 15756890 ~ 15799890 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other upstream 2147844 14514592 ~ 14524976 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other upstream 2196003 14179783 ~ 14476817 (+)
ippk ippk,LOC107755999,LOC106566243 other upstream 2979908 13674354 ~ 13692912 (+)
LOC113537865 LOC108280979 other downstream 573436 17260979 ~ 17263663 (+)
snrpe snrpe other downstream 1999854 18687397 ~ 18692014 (+)
G310681 LOC108254836 other downstream 2399482 19087025 ~ 19087806 (+)
svbp NA other downstream 2807215 19494758 ~ 19498671 (+)
phf13 phf13 other downstream 2820646 19508189 ~ 19517178 (+)

Expression


Co-expression Network