syn2b (syn2,LOC107758022)


Basic Information

Item Value
gene id syn2b
gene name syn2,LOC107758022
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 13358924 ~ 13425482 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932625.2
gacgTGAGAGAGCGGGGAGGCTGAGGCAGAGCACGAGCACGAGCATCTCGCTCAGGCTGTCAGAGCTCAGGCGGACAGGGAGCGTGAGGAAAAGAAGCAGCATTTAGTCATCATTAGGACATCCATCTCAATAAACCCTTGCTAGCAGGAAGTTGTATGGTACAGTGCTTCAGGAGGTCCATCTCCATAAACACCTGAGCAGTTCTTCGTCAATCTCCACCAAGGTTTAACCTTCATCTGCAGCTATGAACTTCCTGCGCCGTCGCCTCTCTGACAGCAGCTTCATTGCCAACCTGCCCAATGGCTACATGACTGATCTGCAAAGACCAgatcctcctccacctcctccacccaGCGCCTCCTCTCAGCAGGCCCCGTCCTCTTCTCCTGGTCCTGCTACAGCCAccgctcctcctcctgctgctccgTCTGTCTCTCCAGCCCCTGAGCGCCGGGCCCAGGCTGCTCCATCCAGCTCGGGCTTCTTCAGCTCCATCACCAATGTGGTGAAGCAGACGGCAGCCTCAGCGGGATTGGTTGAGCAAAGCGCTGCTCAGTCTTCCAAGAAGTTCAAGGTGCTCCTGGTGATCGACGAGCCACAGAATGAATGggCAAAACTGTTCCGTGGGAAGAAGGTCCAAGGAGAATATGATATCCGAGTGGAACAGGCTGAATTCTCCGAGATCAACCTTGTTGCACATACGAATGGAACATGCAGTGTGGACATGCAGGTTATTAGGAATGGGACTAAAGTTGTTCGATCCTTCAAGCCCGACTTTGTACTGGTCCGACAGCATGCTTTCAGCATGGCCCAGAATGAGGACTTTCGTAATCTGATCATCGGCCTGCAATACGCTGGGATTCCCAGTGTGAATTCACTCGAGTCTATTTACAACCTCTGTGACAAGCCATGGGCGTTTGCTCAACTGATAAGCACCTATAAGAAGCTGGGACCTGAAAAATTTCCTCTTATTGAGCAAACTTTCTACCCAAACTACAAGGACATGATCTCCATGCCGACATTCCCGGTggtggtgaagattggacatgCCCACTCTGGCATGGGAAAGGTTAAAGTTGACAATCACAGCGATTTCCAAGACATTGCCAGCGTGGTGGCCATCACGCAGACCTACACGACCACAGAACCTTTCATTGATGCCAAGTATGACATCAGGGTCCAGAAGATAGGCACTGACTACAAAGCTTATATGAGAACATCCATCTCTGGCAACTGGAAATCAAACACTGGTTctgccatgctggaacaagtaGCCATGACAGACAAGTATAAGATGTGGGTTGACATTTGTTCAGAAATTTTTGGAGGGCTGGATGTCTGTGCTGTAAAAGCCATTCACGGAAAGGATGGAAAAGACTACATTACTGAGgTGGTGGGCTCCTCCATGCCGCTCATCGGAGACCACCAAGCAGAAGACAGGCAGCTGATAGCTGATGTTGTCTTGGCCAAGATGAACCAATCAGCAACTAGGGCACCTACTCGAACTCAGCAGCGGCCTCCAACTGCTGTCCAACAACCACAGAGCTCTGCCGTAAAGGAAGGCCTGGCAGACCACAGCAAGCCTCTGTCCCAGCGTGTCCCTCCTCAAGGAGCTCCAGCGAAACCCAAAGAGTCTCAACCCAAGACTCAAGAGCCTCCGACCGCATCAGCGTCTAGCGCTCCAGCCCCAGATCCTGTCTCAAAATCAACTCCTTCCCCAACTCCCCCACCCACAACCCAGCAGCCCAAAGCCCACCCTCAAGCTTCACCCACTCCAGCACCTGGAAAACCAACAGATTTACCCCCAAAGCCCCAGGTTCCAAAACCACTTCCTCCAAAGCCTGTGCCTCCAGTGCGCAGAAACTCCAAGCCTCAGCTCCAGCCCAAGCCCCAAACCCCACCTTCAGCAAAGGTCCAGGCTAAAGTCCAGCCTGAACCAGCAGATCAGGGTCAAATCCCAACCGATTCGGCCCCAGCACATGTTCAGTCCTCACCCAAAGCACCTACTAAAAACCAGTCTCCCACTAAACCACAGGTCCAAACCAAACCTGTGCCTAAAGAGCAAGCCCAGGTTGAGGCTCCAGTTCAGAATGTGGCCTCGTCTGAATCAACACCCTCGGGCCCTGCACCCTCTGCTGTAGAGGAACAGCCTGCACCACAACAGAAGTCATCGCATCCTTTCTTAAATAAATCCCAGTCCCTGACCAATGCCTTTAATGCCTTTGGCGAGACCTTCCGTTCCAGCAATGAGGACGAAGCCAAGGCCGAGACCATTCGAAACCTGCGGAAGTCTTTTGCCAGCTTGTTCTCTGACTAGTGACAAGTTTATGGTTGAGAATTTGTTGGCTGTGGACTTGATTGACAAGAAATGTCCTGGTCTGAGGTTAAGTCTGTGTAGCTGTAATACATTGTCCCCTCCTCCCAACTCTGCTGTAATTGTTCGAATGTCAATAAGCAAGTGGAGTGTGATGTACAGTGATTGTTCTGGCAAGGTGTTCTGTGAGATTTGCGATGGACGGAAACATTTGCCATGTGTATAAGGAGGAGGCCGGCAATGTTCAGATGCATGGTTTCGAGTAAATGGATGTCTAAGGCAATGAAGAGAGAAGAGCCTGATGTGTGCTGACGTTGTCTGTTATAATACCCCTTGATGTTGTAGCCTTATTGTGGAAGTGTATTTCAGTTGCCCAAAGATAAAATATCTGTGAGTAGTTTCCCTTGTCCCTCCCATGCAGTGTGTATATCTAGTTGATCTGTTGTAATATGAAATAGTTCAACAATACCTCGACGGGACCTTTATACAAGCACTTTCCGATCCAAGTTTCCTACAGTATGCAGTGCTTGGACGGGTCTGATTTTAATGCAGTAGTGACGTTTCAGTGGAATGCCTGATGTTTTTGGTGTGGCTTGGGGTCCTCACGTatcaaaatgttaaattaatcaTGAGTGCCATGTAGTATCCTTACATATCgtattgtactgtatgttcAGCATCTCAGGAGGTTAATTTATTTTCTGGTGTCATATATTGTTCACGTTGTGTTTTCTTTGGTCTGAGTGTTACTGCTTTGCATGACTCTGTGACAGTTGTTTTTCTGTACAGGTGTCAATAAATATGTGGCACTTCATTCCACTAATTCACTGTTG

Function

symbol description
syn2 Predicted to enable ATP binding activity. Predicted to be involved in neurotransmitter secretion and synaptic vesicle cycle. Predicted to be located in synapse. Predicted to be part of SNARE complex. Predicted to be active in Schaffer collateral - CA1 synapse; glutamatergic synapse; and synaptic vesicle membrane. Predicted to be extrinsic component of synaptic vesicle membrane. Implicated in schizophrenia.

NR:

description
PREDICTED: synapsin-2

GO:

id name namespace
GO:0007269 neurotransmitter secretion biological_process
GO:0008021 synaptic vesicle cellular_component
GO:0005524 ATP binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K19941 SYN; synapsin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932625.2 True 3148 mRNA 0.50 13 13358924 13425482

Neighbor

gene id symbol gene type direction distance location
atg7 atg7,LOC107697561,LOC107750032 coding upstream 79823 13167155 ~ 13279101 (+)
hrh1 hrh1 coding upstream 197232 13140570 ~ 13161692 (+)
slc6a1b slc6a1,slc6a1b,LOC107670967,LOC107746710,LOC107697564,LOC107750027 coding upstream 285166 13059983 ~ 13073758 (+)
slc6a11b slc6a11,LOC107750026,LOC107697565,LOC107561801 coding upstream 347865 12975527 ~ 13011059 (+)
atp2b2 atp2b2,LOC107570616,LOC107561799,LOC102776443,LOC106566233,LOC107746712 coding upstream 399818 12789492 ~ 12959106 (+)
pparg pparg,LOC107742034,LOC107667870,LOC107571218 coding downstream 15177 13440659 ~ 13476589 (+)
tsen2 tsen2 coding downstream 55929 13481411 ~ 13495985 (+)
mkrn2 mkrn2 coding downstream 82927 13508409 ~ 13521412 (+)
cnbpb cnbp,cnbpb,LOC108254964,LOC108431552,LOC106566283,LOC105905103,LOC107742027 coding downstream 139587 13565069 ~ 13568961 (+)
LOC113537916 LOC108254963 coding downstream 143607 13569089 ~ 13578359 (+)
G307079 NA non-coding upstream 8244 13350453 ~ 13350680 (+)
G306959 NA non-coding upstream 24679 13331687 ~ 13334245 (+)
G306961 NA non-coding upstream 25676 13332806 ~ 13333248 (+)
G306937 NA non-coding upstream 65485 13288789 ~ 13293439 (+)
G306938 vgll4,vgll4b,LOC107750033,LOC107697562 non-coding upstream 75917 13196475 ~ 13283007 (+)
G307154 NA non-coding downstream 75984 13501466 ~ 13501831 (+)
G307161 NA non-coding downstream 96527 13522009 ~ 13524054 (+)
LOC117599900 NA non-coding downstream 514944 13940426 ~ 13960190 (+)
G307272 NA non-coding downstream 578126 14003608 ~ 14003831 (+)
G307262 pdhb,LOC107721006 non-coding downstream 589680 14015162 ~ 14016394 (+)
G306480 tuba1c,LOC103148207,LOC106920718,LOC102311436,LOC101065103 other upstream 896388 12457601 ~ 12462536 (+)
G306103 NA other upstream 1843111 11515059 ~ 11515813 (+)
G305955 iqsec1 other upstream 1877824 11480669 ~ 11481100 (+)
G305869 NA other upstream 2032564 11325604 ~ 11326360 (+)
G305863 iqsec1,iqsec1b other upstream 2043488 11314184 ~ 11315436 (+)
ippk ippk,LOC107755999,LOC106566243 other downstream 248872 13674354 ~ 13692912 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other downstream 754301 14179783 ~ 14476817 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other downstream 1089110 14514592 ~ 14524976 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other downstream 2331408 15756890 ~ 15799890 (+)
amigo3 amigo3 other downstream 3063879 16489361 ~ 16501684 (+)

Expression


Co-expression Network