LOC113537956


Basic Information

Item Value
gene id LOC113537956
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 18403538 ~ 18409560 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932712.2
GCATTTGTCACATGCTGAAATGGACACGGTCAGAGTgtctctgtggtgtgtgttggcTCTGCTCAGCTTCCTCTCTCTGGAGGCTTCAGAATCTAACCCTGGAGTTATAGTGAGAGTCACTCAAAATGGGCTTGAGTATGAACGTCAGATTAGCATCACTCCCCTACAGGAGGAGCTCAAAACCATCTACATCTCAGACATGCATGGCACAGCAGAAGTTTTATTTATGGACGTCGACTACAGAGTgacacaCATGAAGATCCAGGACGTCGAGTTACCCACGTCAGCTGTGAGGTTGGTACCTGGTACCGGGGTGAGTCTGTCCATCACCAATGCCTACATTAGCGTGAGAGGCAACTGGCATGTCGAATATCTCTTCATAGACGATGACGGCTGGTTCGATTTGGCCATTAGAGGACTCAGCATCAGCGCCACCATCGCTGTAAATAACGATGGTTCGGGTCATCCGATGGTCAGCACTGCTTACTGTACATCTTCTATTGGCCAAGTCGATATCACACTTCATGGAGGTTTGAGCTGGCTGTATCAGCTGTTTGACGGCTACATCAATTCAGCTCTGCTTGATGCCTTACGGCCACAGCTCTGTTCTCTGGTgactgaagaaataaatagcTTGAATCTACATCTGAAAACTCTAAATGtttCTGCACCAGTTGACAAGTACGCTGAAATCGAGTACTCCATGTTGGGGTCGCCGTTTGTTTCTAATTCTGGCATTGATCTCAGTTTAAAGgGGGAGTTCTACAACATCGGGCAGCATAAGGAGCCTCCGTTCTCCCCGACACCCATCTCCCTCCCTGCACAGGGCAGCAAAATGATGTATATCGGATTATCAGCCTTCACCTTGAACTCAGCCGGCTTTGTGTACAACAACGCCGGAGTGCTCAAACTCTACGTAACAGACGACATGATCCCTTCCAGTTTTCCCTTTCGACTGGACACGAAGACATTTGGGAAGTTAATTCCACAAATAGCTAAGCAGTACCCTGGCCTGATGATGAAGCTCCTGGTGAAGGCTGTGAAGGAGCCGAACATCTCATTTGAGCCCAACAACATGACTATGCAGGCAATCAGCACAGTTACAGCCTACGCTATTCAGCCCAACGCCACGCTGACTCCTCTATTCGTCCTCAACGTGAATGCCAGCGTGAGCGCTTTGATTTATGTCAGTGGCCTCAGAGTGGCTGGAAATTTGACTCTTAACAAAATTGACATGACATTAGGGACGAGCTATGTGGGACCATTTCAGGTGGAATCACTTGACAATGTTTTTAGGACTATCTTGACTGCTGCTGTGATACCCAAGGTTAATGCTCGCCTACAGCAAGGTTATCCTCTACCTGCCATCGGAAAAATGAATCTGCTCAACACTCAGCTTCAAATCCTGAAGGATTACGTGTTGATCGGGACAGACGTCCAGTTCATGGGCTTGAATCTACCTGATGTCCTCTAACAGTGGATTCTGTTTACTAATTTCCTCATATGAAACGCTCTTCATGATAAATAATGAGTTCATGATAAATAAACTAGTGGCATCTCTA

Function

GO: NA

KEGG:

id description
K05399 LBP; lipopolysaccharide-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932712.2 True 1562 mRNA 0.47 16 18403538 18409560

Neighbor

gene id symbol gene type direction distance location
LOC113537957 LOC100304639 coding upstream 5466 18390505 ~ 18398072 (+)
rap1ab rap1b,rap1a,rap1ab,LOC105901888,LOC106566052,LOC107560426,LOC107742898,LOC108413334 coding upstream 285219 18102837 ~ 18118319 (+)
rnf207a LOC108255220 coding upstream 369076 18030193 ~ 18034462 (+)
LOC113537884 NA coding upstream 374908 18025641 ~ 18028630 (+)
c20h1orf158 c21h1orf158 coding upstream 1015819 17380999 ~ 17387719 (+)
ghrh ghrh coding downstream 10899 18420459 ~ 18427187 (+)
si:ch73-303b9.1 LOC108254896 coding downstream 44250 18453810 ~ 18454920 (+)
phactr3b phactr3,LOC108254891 coding downstream 67524 18477084 ~ 18540726 (+)
si:ch211-266k22.6 LOC108255298 coding downstream 143842 18553402 ~ 18558681 (+)
pdrg1 pdrg1,LOC107550337,LOC107580937 coding downstream 150462 18560022 ~ 18564811 (+)
G310084 NA non-coding upstream 281283 18122030 ~ 18122255 (+)
G309970 NA non-coding upstream 345371 17964424 ~ 18058167 (+)
G310007 NA non-coding upstream 360024 18040882 ~ 18043514 (+)
G309933 rpl22,LOC100304536,LOC103047485,LOC106566811,LOC108414460 non-coding upstream 385442 17919536 ~ 18018096 (+)
G310201 NA non-coding downstream 17865 18427425 ~ 18430590 (+)
G310208 mybl2 non-coding downstream 34525 18444085 ~ 18445034 (+)
G310183 LOC105009000,LOC107722005,LOC107551326,LOC107654800,LOC107670934 non-coding downstream 58243 18467803 ~ 18471024 (+)
LOC113538055 NA non-coding downstream 186956 18596516 ~ 18601724 (+)
G310416 NA non-coding downstream 192818 18602378 ~ 18602580 (+)
LOC113537865 LOC108280979 other upstream 1139875 17260979 ~ 17263663 (+)
amigo3 amigo3 other upstream 1901854 16489361 ~ 16501684 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other upstream 2603648 15756890 ~ 15799890 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other upstream 3878562 14514592 ~ 14524976 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other upstream 3926721 14179783 ~ 14476817 (+)
snrpe snrpe other downstream 277837 18687397 ~ 18692014 (+)
G310681 LOC108254836 other downstream 677465 19087025 ~ 19087806 (+)
svbp NA other downstream 1085198 19494758 ~ 19498671 (+)
phf13 phf13 other downstream 1098629 19508189 ~ 19517178 (+)
vamp3 vamp3 other downstream 1359423 19768983 ~ 19783925 (+)

Expression


Co-expression Network