LOC113537957 (LOC100304639)


Basic Information

Item Value
gene id LOC113537957
gene name LOC100304639
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 18390505 ~ 18398072 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932713.2
GCTTGCGGCGTATGATTGCATGTGTGTCTAATACCAGGATTTGGACATTACCTGAGTGtttcagtggggaaaaaaaacatgagcaagACATTCAATACATTCTGCAACTGGTTACTTGTTAGGAGCACGAGGGCTGTAAGTCAATTTGGAAACAGCCTCTTGCTGGTTTCACTTCCCTCTTTCACTCCAGCTCAGGAGCTGCTCCTTTCCTGACAAACAGAGaagcagagacagagaacaaAGGCATTACTGCGACATTTCAAGgTCAGAGTGGACATGGTgtctctgtggtgtgtgttggcTCTGCTCAGCTTTCTCTCTCCGGAGGCTTCAGGAATTAACCCGGGAGTTAAAGTGAGACTCACTGAAAAGGGGCTCGAGTATGGCCGTCAGATTGGCCTCATCGCCCTACAGAAGAAGTTCAAAACCATCAAAATCCCAGACATGAGCGGTTCAGTGAAAGTGTCTCCCATCGGCAAAGTCTCGTACAGTCTGACAAACATACAAATCTTAAATCTGGGGTTGCCCAAGTCGGCCGTGGGGTTGGCACCGGGCACCGGGGTGAGTCTGTCCATCAGCGATGCCTACATTAACCTGCACGGCAACTGGAGAGTCAAATACCACAAACTCATAAAGGACAAGGGCTCGTTCGACTTGTCTGTTAGCGGACTCAGCATCAGCGCCACCATCGGTGTGAAAGGTGATGACACGGGCCGTCCGATGGTCAGCAGTGTTAACTGTGCAGCCTCTGTTGGCCAAGTCAATGTCAAGTTTCATGGAGGTGCCAGCTGGCTGTATAATCTGTTTAAGCACTACATCGATAAGGCTCTGCGCAGTGCACTACAGAAGCAGatCTGTTCTCTGGTGGGTGAAGCCATAGACGAGATGAATCCCCATCTGAAAACTTTAAATGTTCTTGCGCAAGTTGACAAGTACGCTGAAATCGAGTACTCCATGGTGGAGTCGCCGCTCATTTCAGATTCCAGCATTGATCTCAGTTTAAAGgGGGAGTTCTACAACATCGGGCAGCATAAGGAGCCTCCGTTCTCCCCGACACCCATCTCCCTCCCTGCTCAGGACAGCAACATGCTGTATATCGGATTATCAGCCTTCACCCTGAACTCAGCCGGCTTTGTGTACAACAACGCCGGAGTGCTCAGCCTCTACGTAACAGACGACATGATCCCTTCCAGTTTTCCTATTCGACTGAACACGAGGACATTTGGGACCTTCATTCCACAAATAGCTAAGCAGTACCCTGGCCTGATGATGAAGCTCCTGGTGAAGGCTGTGAAGGAGCCGAACATCTCATTTGAGCCCAACAACATGACTATGCAGGCAAGCAGCACAGTTACAGCCTACGCTATTCAGCCCAACGCCACGCTGACTCCTCTATTCGTCCTCAACGTGAATGCCAGCGTGAGCGCTCAGATTTACGTCAGTGGCCTCAAAGTGGCTGGAGATTTGAGTCTCAATGAAATGGACATGACATTAGTGACAAGCTATGTGGGACCATTTCAGGTGAAATCACTCGACAGTGTTCTCTCGATGATCTTGAAAGTTGTGGTGATACCCAAGGTTAACGCTTACTTAAAGCAAGGTTATCCTCTACCTGCCATCGGAAAAATGAACCTGCTTAACACGCAGCTTCAAATCCTGAAGGATTATGTGTTGATCGGGACAGATGTCCAGTTCACTGGATGGGCCTTGCCTGATGTCTACTAACAGGAGATTCCTTTTACAAACAATTCTGTTTGCTTCCTTTCTTTCTAACAGTCCATGACCTTTGTACGAgttcatatataaataaataaaaatgatatttctgtc

Function

GO:

id name namespace
GO:0008289 lipid binding molecular_function

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932713.2 True 1830 mRNA 0.48 16 18390505 18398072

Neighbor

gene id symbol gene type direction distance location
rap1ab rap1b,rap1a,rap1ab,LOC105901888,LOC106566052,LOC107560426,LOC107742898,LOC108413334 coding upstream 272186 18102837 ~ 18118319 (+)
rnf207a LOC108255220 coding upstream 356043 18030193 ~ 18034462 (+)
LOC113537884 NA coding upstream 361875 18025641 ~ 18028630 (+)
c20h1orf158 c21h1orf158 coding upstream 1002786 17380999 ~ 17387719 (+)
aadacl4 aadacl4 coding upstream 1009577 17376959 ~ 17380928 (+)
LOC113537956 NA coding downstream 5466 18403538 ~ 18409560 (+)
ghrh ghrh coding downstream 22387 18420459 ~ 18427187 (+)
si:ch73-303b9.1 LOC108254896 coding downstream 55738 18453810 ~ 18454920 (+)
phactr3b phactr3,LOC108254891 coding downstream 79012 18477084 ~ 18540726 (+)
si:ch211-266k22.6 LOC108255298 coding downstream 155330 18553402 ~ 18558681 (+)
G310084 NA non-coding upstream 268250 18122030 ~ 18122255 (+)
G309970 NA non-coding upstream 332338 17964424 ~ 18058167 (+)
G310007 NA non-coding upstream 346991 18040882 ~ 18043514 (+)
G309933 rpl22,LOC100304536,LOC103047485,LOC106566811,LOC108414460 non-coding upstream 372409 17919536 ~ 18018096 (+)
G309981 chd5,LOC108414967 non-coding upstream 413414 17976615 ~ 17977091 (+)
G310201 NA non-coding downstream 29353 18427425 ~ 18430590 (+)
G310208 mybl2 non-coding downstream 46013 18444085 ~ 18445034 (+)
G310183 LOC105009000,LOC107722005,LOC107551326,LOC107654800,LOC107670934 non-coding downstream 69731 18467803 ~ 18471024 (+)
LOC113538055 NA non-coding downstream 198444 18596516 ~ 18601724 (+)
G310416 NA non-coding downstream 204306 18602378 ~ 18602580 (+)
LOC113537865 LOC108280979 other upstream 1126842 17260979 ~ 17263663 (+)
amigo3 amigo3 other upstream 1888821 16489361 ~ 16501684 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other upstream 2590615 15756890 ~ 15799890 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other upstream 3865529 14514592 ~ 14524976 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other upstream 3913688 14179783 ~ 14476817 (+)
snrpe snrpe other downstream 289325 18687397 ~ 18692014 (+)
G310681 LOC108254836 other downstream 688953 19087025 ~ 19087806 (+)
svbp NA other downstream 1096686 19494758 ~ 19498671 (+)
phf13 phf13 other downstream 1110117 19508189 ~ 19517178 (+)
vamp3 vamp3 other downstream 1370911 19768983 ~ 19783925 (+)

Expression


Co-expression Network