LOC113537968 (sox13)


Basic Information

Item Value
gene id LOC113537968
gene name sox13
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 18708742 ~ 18741557 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932730.2
TGCAAAGCAAGAAGAGCGTTTCCATTCCGAGGAGGTCACCGAGCACTCAGGTCATAGAGAACCTCGGCAGCTGTGCCATGACTTGCTTCACCGCTTTCCCACGCTGGCAAACGGCACTGCACATGAGAGATGAGCTGTGGATGACAAGGGCTGATCAGAAATTCTTGAGAATGTGTGAGCCCAGTCCTCCTGCGATACAACCCCATGCTGGTGGTAACGTGACCATGGTGGGCATTGGCATCAAGCTGGAGGAGGCGCCTGGAGATGGAGGCGGAGTCAGGGAGTCACAGCAGTCCTCGCCTACATGCGATTGGTCATCACGGCCGCCAGCCGAACGAGACGATCCTGAGAAGTCAAAGACTCGCAGCACTCAGTCCCCTTCGGCAGGTTCACCTAGCAAAgagcaagcacacacacttagtcCCAGCAGTCAGGATGTGCTGAACAGGCCCAACAGCAGGCCCGAGGCCCAGCCGAATGTCAGCGAGGTGCTGCCCACAATTGAGAAAATCCTGAACGCAGACTGGAGAGAGAAGATCTTGGGAAAGGGATTGCAAGGCACTGCCAATGTGAAAGgcactCCAGAAAGCCTGGCTGAGAAGGAGCTTCAGCTGTTGCTGATGATTAACCAGTTGTCTGGGCTGAGGGAGCAGTTGCTGGGAGCACACTCGGAGCAGAGGAACATGGCCGCCCTGCTCCTggagaaacagcagcagcagatggAGCTGGCCCGACAGCAGCAGGAACAGattgctaaacagcagcagcagctgatcCAACAGCAGCACAAGATCAACCTGCTGCAGCAGCAGATCCAGCAGGTGAATTTGCCCTATGTGATGATCCCGGCTTtccacccaaacacacagccacTGCCCGTGTCCTCTGATACACAGATGGGGCTCCCGCTTCAGCCCATTCCCTGCAAGCCAGtgGAATATCCCATGCATCTACTCCCAAACCCTCACTCCACCCCTATCAAAAGATCCAGTGGTACAGTCTTTCGACAGGAGAGCAGTCAGCCATTGAACCTCACAGCCAAACCCAAGAGCCCCCAGAGCCTGGATCTTCCATCTTCCCACCTCCAGTCCACCTACAGGACTAGAGAGCTACAGCACAGCCCCCCTCGACCTGCGCTTAGCCTGGGCTTCTTGGGAGAGGGGGATATTGTGAGCCAAACCATCCATGAAGCCCAGCAGCTGTTGCGAGGAGGCCAAGGTCCAGCGGGCCGAGAGAGGGACAGCAGCACAAGGCTGAATGATTATAAGGAAGCATCCCGAGCTGACCGCATACTCCATGCCGACCGCGCGGAGGACGGACAGTCCATACGGACGAATGACGAGCATCTCAGCAGTGACTCTGAAGGACAGATCGTCTCTGGAGTGGGAGGCTACACCGACAGCCGGAGCTCCTCTTCCGGACACATCAAGAGACCCATGAACGCCTTCATGGTGTGGGCGAAGGACGAACGCCGGCGCATCCTACAAGCCTTTCCTGATATGCATAACTCAAGCATCAGCAAGATCCtggGCTCACGCTGGAAGTCCATGTCCAACCAGGAGAAGCAGCCGTACTATGAGGAGCAGGCCCGGCTGAGCAGACAGCACCTGGAGCGCTACCCAGACTACAAGTACAAGCCCCGGCCGAAGCGCACGTGCATCGTGGAGGGCAGGCGGCTGCGCGTGGGCGAGTACAAAGCCATGATGAAGAGCCGCAGGCAGGAGCAGCGCGCTTCGTACCCATCCAGTCAGTCAGATCAGCAGCTGCACTACTCCACGGGTGAGGCTCCGTACTCCACCAAAACCATGTCCATGACGCTGCCTCTGCACCCTTCCCTTCTGGAGCACTACCTCCCTCGTTCCCTCGAGCCACCCCAAGCCCCACGTGGCCCAGAGGAAGCGGACGGGCCCCGTTCCAAAGCGCCGTACAGCGAGGGAGAAGAGAGTGACGGAGGAGAGCGCAGCGAGGGCGAGCTGGTGGTTCTCACTGACTGACAGGGGGGCGGGATGAGAGAACAGGGTGCTGTGAGGTGAAATGTTTGGGTTTCTGGGGCAAGGTGCTTTCAGGTGTTGAGGGCTCACAGTTCACCGAGGAGTGAATCTTTGCTTTTCCTAGACTACTTTACGCCAGCGGTGATGACAATGTTGAGGGAcggcttattaaaaaaatgctagttatttaaaataataataataataataaacgcaTTTGACAGTCCTTCAGTGCTGCTGTTGGTCAGCGTGCTGCACTTTCCTTCAGTGAAAAGGGCTTTAAAATGCAGATCAGAGGAAGAAATGAGCATATGTGCAGCAGATAAACACTGGGAAATCAGGCTTAACAGTGTTATGCTAAATTGCATAAATGCATACTATTTACACCAAAATGTATCCTGTCAATGTGTAACGCTTACAACTTAGTTTTGCACTAGGGCTACCAGACGAATGGAGCGAACATTAATGGAAACGTATGCAAAAATGCTCTTTTTGGGTGCAAATCTATAGAAAACGTTTCATTATTGGACAAACGATTCCTTTAATTCAAGCTGAACTCAATCAattaatttacaatt
>XM_026932733.2
TGCAAAGCAAGAAGAGCGTTTCCATTCCGAGGAGGTCACCGAGCACTCAGGTCATAGAGAACCTCGGCAGCTGTGCCATGACTTGCTTCACCGCTTTCCCACGCTGGCAAACGGCACTGCACATGAGAGATGAGCTGTGGATGACAAGGGCTGATCAGAAATTCTTGAGAATGTGTGAGCCCAGTCCTCCTGCGATACAACCCCATGCTGGTGGTAACGTGACCATGGTGGGCATTGGCATCAAGCTGGAGGAGGCGCCTGGAGATGGAGGCGGAGTCAGGGAGTCACAGCAGTCCTCGCCTACATGCGATTGGTCATCACGGCCGCCAGCCGAACGAGACGATCCTGAGAAGTCAAAGACTCGCAGCACTCAGTCCCCTTCGGCAGGTTCACCTAGCAAAgagcaagcacacacacttagtcCCAGCAGTCAGGATGTGCTGAACAGGCCCAACAGCAGGCCCGAGGCCCAGCCGAATGTCAGCGAGGTGCTGCCCACAATTGAGAAAATCCTGAACGCAGACTGGAGAGAGAAGATCTTGGGAAAGGGATTGCAAGGCACTGCCAATGTGAAAGgcactCCAGAAAGCCTGGCTGAGAAGGAGCTTCAGCTGTTGCTGATGATTAACCAGTTGTCTGGGCTGAGGGAGCAGTTGCTGGGAGCACACTCGGAGCAGAGGAACATGGCCGCCCTGCTCCTggagaaacagcagcagcagatggAGCTGGCCCGACAGCAGCAGGAACAGattgctaaacagcagcagcagctgatcCAACAGCAGCACAAGATCAACCTGCTGCAGCAGCAGATCCAGGTGAATTTGCCCTATGTGATGATCCCGGCTTtccacccaaacacacagccacTGCCCGTGTCCTCTGATACACAGATGGGGCTCCCGCTTCAGCCCATTCCCTGCAAGCCAGtgGAATATCCCATGCATCTACTCCCAAACCCTCACTCCACCCCTATCAAAAGATCCAGTGGTACAGTCTTTCGACAGGAGAGCAGTCAGCCATTGAACCTCACAGCCAAACCCAAGAGCCCCCAGAGCCTGGATCTTCCATCTTCCCACCTCCAGTCCACCTACAGGACTAGAGAGCTACAGCACAGCCCCCCTCGACCTGCGCTTAGCCTGGGCTTCTTGGGAGAGGGGGATATTGTGAGCCAAACCATCCATGAAGCCCAGCAGCTGTTGCGAGGAGGCCAAGGTCCAGCGGGCCGAGAGAGGGACAGCAGCACAAGGCTGAATGATTATAAGGAAGCATCCCGAGCTGACCGCATACTCCATGCCGACCGCGCGGAGGACGGACAGTCCATACGGACGAATGACGAGCATCTCAGCAGTGACTCTGAAGGACAGATCGTCTCTGGAGTGGGAGGCTACACCGACAGCCGGAGCTCCTCTTCCGGACACATCAAGAGACCCATGAACGCCTTCATGGTGTGGGCGAAGGACGAACGCCGGCGCATCCTACAAGCCTTTCCTGATATGCATAACTCAAGCATCAGCAAGATCCtggGCTCACGCTGGAAGTCCATGTCCAACCAGGAGAAGCAGCCGTACTATGAGGAGCAGGCCCGGCTGAGCAGACAGCACCTGGAGCGCTACCCAGACTACAAGTACAAGCCCCGGCCGAAGCGCACGTGCATCGTGGAGGGCAGGCGGCTGCGCGTGGGCGAGTACAAAGCCATGATGAAGAGCCGCAGGCAGGAGCAGCGCGCTTCGTACCCATCCAGTCAGTCAGATCAGCAGCTGCACTACTCCACGGGTGAGGCTCCGTACTCCACCAAAACCATGTCCATGACGCTGCCTCTGCACCCTTCCCTTCTGGAGCACTACCTCCCTCGTTCCCTCGAGCCACCCCAAGCCCCACGTGGCCCAGAGGAAGCGGACGGGCCCCGTTCCAAAGCGCCGTACAGCGAGGGAGAAGAGAGTGACGGAGGAGAGCGCAGCGAGGGCGAGCTGGTGGTTCTCACTGACTGACAGGGGGGCGGGATGAGAGAACAGGGTGCTGTGAGGTGAAATGTTTGGGTTTCTGGGGCAAGGTGCTTTCAGGTGTTGAGGGCTCACAGTTCACCGAGGAGTGAATCTTTGCTTTTCCTAGACTACTTTACGCCAGCGGTGATGACAATGTTGAGGGAcggcttattaaaaaaatgctagttatttaaaataataataataataataaacgcaTTTGACAGTCCTTCAGTGCTGCTGTTGGTCAGCGTGCTGCACTTTCCTTCAGTGAAAAGGGCTTTAAAATGCAGATCAGAGGAAGAAATGAGCATATGTGCAGCAGATAAACACTGGGAAATCAGGCTTAACAGTGTTATGCTAAATTGCATAAATGCATACTATTTACACCAAAATGTATCCTGTCAATGTGTAACGCTTACAACTTAGTTTTGCACTAGGGCTACCAGACGAATGGAGCGAACATTAATGGAAACGTATGCAAAAATGCTCTTTTTGGGTGCAAATCTATAGAAAACGTTTCATTATTGGACAAACGATTCCTTTAATTCAAGCTGAACTCAATCAattaatttacaatt
>XM_026932734.2
TAGACAACCTGAGCCATTCGTTCTATTGTCGTGCGTATGGAAAGCATTCAATATCAGAGGCGCTTCAGCTAAGGCTGAATTCCAAACCACGTTGTAGTAGTGTACGAGACTGCTGTAGGCAGCATTTTGACAtactaataatacaataatatccATTCTTGGAAAAGAACAAGACTTAACTTCAGAAAGCACGTCTGTAGCGACTAGAGAAATGACTCCTCAACCACACAACAGAATGTGTGAGCCCAGTCCTCCTGCGATACAACCCCATGCTGGTGGTAACGTGACCATGGTGGGCATTGGCATCAAGCTGGAGGAGGCGCCTGGAGATGGAGGCGGAGTCAGGGAGTCACAGCAGTCCTCGCCTACATGCGATTGGTCATCACGGCCGCCAGCCGAACGAGACGATCCTGAGAAGTCAAAGACTCGCAGCACTCAGTCCCCTTCGGCAGGTTCACCTAGCAAAgagcaagcacacacacttagtcCCAGCAGTCAGGATGTGCTGAACAGGCCCAACAGCAGGCCCGAGGCCCAGCCGAATGTCAGCGAGGTGCTGCCCACAATTGAGAAAATCCTGAACGCAGACTGGAGAGAGAAGATCTTGGGAAAGGGATTGCAAGGCACTGCCAATGTGAAAGgcactCCAGAAAGCCTGGCTGAGAAGGAGCTTCAGCTGTTGCTGATGATTAACCAGTTGTCTGGGCTGAGGGAGCAGTTGCTGGGAGCACACTCGGAGCAGAGGAACATGGCCGCCCTGCTCCTggagaaacagcagcagcagatggAGCTGGCCCGACAGCAGCAGGAACAGattgctaaacagcagcagcagctgatcCAACAGCAGCACAAGATCAACCTGCTGCAGCAGCAGATCCAGCAGGTGAATTTGCCCTATGTGATGATCCCGGCTTtccacccaaacacacagccacTGCCCGTGTCCTCTGATACACAGATGGGGCTCCCGCTTCAGCCCATTCCCTGCAAGCCAGtgGAATATCCCATGCATCTACTCCCAAACCCTCACTCCACCCCTATCAAAAGATCCAGTGGTACAGTCTTTCGACAGGAGAGCAGTCAGCCATTGAACCTCACAGCCAAACCCAAGAGCCCCCAGAGCCTGGATCTTCCATCTTCCCACCTCCAGTCCACCTACAGGACTAGAGAGCTACAGCACAGCCCCCCTCGACCTGCGCTTAGCCTGGGCTTCTTGGGAGAGGGGGATATTGTGAGCCAAACCATCCATGAAGCCCAGCAGCTGTTGCGAGGAGGCCAAGGTCCAGCGGGCCGAGAGAGGGACAGCAGCACAAGGCTGAATGATTATAAGGAAGCATCCCGAGCTGACCGCATACTCCATGCCGACCGCGCGGAGGACGGACAGTCCATACGGACGAATGACGAGCATCTCAGCAGTGACTCTGAAGGACAGATCGTCTCTGGAGTGGGAGGCTACACCGACAGCCGGAGCTCCTCTTCCGGACACATCAAGAGACCCATGAACGCCTTCATGGTGTGGGCGAAGGACGAACGCCGGCGCATCCTACAAGCCTTTCCTGATATGCATAACTCAAGCATCAGCAAGATCCtggGCTCACGCTGGAAGTCCATGTCCAACCAGGAGAAGCAGCCGTACTATGAGGAGCAGGCCCGGCTGAGCAGACAGCACCTGGAGCGCTACCCAGACTACAAGTACAAGCCCCGGCCGAAGCGCACGTGCATCGTGGAGGGCAGGCGGCTGCGCGTGGGCGAGTACAAAGCCATGATGAAGAGCCGCAGGCAGGAGCAGCGCGCTTCGTACCCATCCAGTCAGTCAGATCAGCAGCTGCACTACTCCACGGGTGAGGCTCCGTACTCCACCAAAACCATGTCCATGACGCTGCCTCTGCACCCTTCCCTTCTGGAGCACTACCTCCCTCGTTCCCTCGAGCCACCCCAAGCCCCACGTGGCCCAGAGGAAGCGGACGGGCCCCGTTCCAAAGCGCCGTACAGCGAGGGAGAAGAGAGTGACGGAGGAGAGCGCAGCGAGGGCGAGCTGGTGGTTCTCACTGACTGACAGGGGGGCGGGATGAGAGAACAGGGTGCTGTGAGGTGAAATGTTTGGGTTTCTGGGGCAAGGTGCTTTCAGGTGTTGAGGGCTCACAGTTCACCGAGGAGTGAATCTTTGCTTTTCCTAGACTACTTTACGCCAGCGGTGATGACAATGTTGAGGGAcggcttattaaaaaaatgctagttatttaaaataataataataataataaacgcaTTTGACAGTCCTTCAGTGCTGCTGTTGGTCAGCGTGCTGCACTTTCCTTCAGTGAAAAGGGCTTTAAAATGCAGATCAGAGGAAGAAATGAGCATATGTGCAGCAGATAAACACTGGGAAATCAGGCTTAACAGTGTTATGCTAAATTGCATAAATGCATACTATTTACACCAAAATGTATCCTGTCAATGTGTAACGCTTACAACTTAGTTTTGCACTAGGGCTACCAGACGAATGGAGCGAACATTAATGGAAACGTATGCAAAAATGCTCTTTTTGGGTGCAAATCTATAGAAAACGTTTCATTATTGGACAAACGATTCCTTTAATTCAAGCTGAACTCAATCAattaatttacaatt
>XM_026932735.2
acacacacacacacacacacacacactcgcgcgcgCACCAGAAAGTGACTTGTGCGTGCAGGGAGACCGGACAGCGCCTAGACGTTAGACGGGAGCGCGAGCTGTAATGATCTCGagctgtgtgtgatttttcatTTGAGCGCGTGCCTCTGATTAAAGCGCTTctcagaaaacaacaacaacaacaacaacatcacaaCACAACAACGCATGCGGTCTGTGTGTCTTCGCTCAGGAATAAGAAGTTCTGGCTTTTTTCAGCACGGTTTCCCCCGGAGTGTGAATGTGTGAGCCCAGTCCTCCTGCGATACAACCCCATGCTGGTGGTAACGTGACCATGGTGGGCATTGGCATCAAGCTGGAGGAGGCGCCTGGAGATGGAGGCGGAGTCAGGGAGTCACAGCAGTCCTCGCCTACATGCGATTGGTCATCACGGCCGCCAGCCGAACGAGACGATCCTGAGAAGTCAAAGACTCGCAGCACTCAGTCCCCTTCGGCAGGTTCACCTAGCAAAgagcaagcacacacacttagtcCCAGCAGTCAGGATGTGCTGAACAGGCCCAACAGCAGGCCCGAGGCCCAGCCGAATGTCAGCGAGGTGCTGCCCACAATTGAGAAAATCCTGAACGCAGACTGGAGAGAGAAGATCTTGGGAAAGGGATTGCAAGGCACTGCCAATGTGAAAGgcactCCAGAAAGCCTGGCTGAGAAGGAGCTTCAGCTGTTGCTGATGATTAACCAGTTGTCTGGGCTGAGGGAGCAGTTGCTGGGAGCACACTCGGAGCAGAGGAACATGGCCGCCCTGCTCCTggagaaacagcagcagcagatggAGCTGGCCCGACAGCAGCAGGAACAGattgctaaacagcagcagcagctgatcCAACAGCAGCACAAGATCAACCTGCTGCAGCAGCAGATCCAGCAGGTGAATTTGCCCTATGTGATGATCCCGGCTTtccacccaaacacacagccacTGCCCGTGTCCTCTGATACACAGATGGGGCTCCCGCTTCAGCCCATTCCCTGCAAGCCAGtgGAATATCCCATGCATCTACTCCCAAACCCTCACTCCACCCCTATCAAAAGATCCAGTGGTACAGTCTTTCGACAGGAGAGCAGTCAGCCATTGAACCTCACAGCCAAACCCAAGAGCCCCCAGAGCCTGGATCTTCCATCTTCCCACCTCCAGTCCACCTACAGGACTAGAGAGCTACAGCACAGCCCCCCTCGACCTGCGCTTAGCCTGGGCTTCTTGGGAGAGGGGGATATTGTGAGCCAAACCATCCATGAAGCCCAGCAGCTGTTGCGAGGAGGCCAAGGTCCAGCGGGCCGAGAGAGGGACAGCAGCACAAGGCTGAATGATTATAAGGAAGCATCCCGAGCTGACCGCATACTCCATGCCGACCGCGCGGAGGACGGACAGTCCATACGGACGAATGACGAGCATCTCAGCAGTGACTCTGAAGGACAGATCGTCTCTGGAGTGGGAGGCTACACCGACAGCCGGAGCTCCTCTTCCGGACACATCAAGAGACCCATGAACGCCTTCATGGTGTGGGCGAAGGACGAACGCCGGCGCATCCTACAAGCCTTTCCTGATATGCATAACTCAAGCATCAGCAAGATCCtggGCTCACGCTGGAAGTCCATGTCCAACCAGGAGAAGCAGCCGTACTATGAGGAGCAGGCCCGGCTGAGCAGACAGCACCTGGAGCGCTACCCAGACTACAAGTACAAGCCCCGGCCGAAGCGCACGTGCATCGTGGAGGGCAGGCGGCTGCGCGTGGGCGAGTACAAAGCCATGATGAAGAGCCGCAGGCAGGAGCAGCGCGCTTCGTACCCATCCAGTCAGTCAGATCAGCAGCTGCACTACTCCACGGGTGAGGCTCCGTACTCCACCAAAACCATGTCCATGACGCTGCCTCTGCACCCTTCCCTTCTGGAGCACTACCTCCCTCGTTCCCTCGAGCCACCCCAAGCCCCACGTGGCCCAGAGGAAGCGGACGGGCCCCGTTCCAAAGCGCCGTACAGCGAGGGAGAAGAGAGTGACGGAGGAGAGCGCAGCGAGGGCGAGCTGGTGGTTCTCACTGACTGACAGGGGGGCGGGATGAGAGAACAGGGTGCTGTGAGGTGAAATGTTTGGGTTTCTGGGGCAAGGTGCTTTCAGGTGTTGAGGGCTCACAGTTCACCGAGGAGTGAATCTTTGCTTTTCCTAGACTACTTTACGCCAGCGGTGATGACAATGTTGAGGGAcggcttattaaaaaaatgctagttatttaaaataataataataataataaacgcaTTTGACAGTCCTTCAGTGCTGCTGTTGGTCAGCGTGCTGCACTTTCCTTCAGTGAAAAGGGCTTTAAAATGCAGATCAGAGGAAGAAATGAGCATATGTGCAGCAGATAAACACTGGGAAATCAGGCTTAACAGTGTTATGCTAAATTGCATAAATGCATACTATTTACACCAAAATGTATCCTGTCAATGTGTAACGCTTACAACTTAGTTTTGCACTAGGGCTACCAGACGAATGGAGCGAACATTAATGGAAACGTATGCAAAAATGCTCTTTTTGGGTGCAAATCTATAGAAAACGTTTCATTATTGGACAAACGATTCCTTTAATTCAAGCTGAACTCAATCAattaatttacaatt
>XM_026932736.2
ctgtctctctctctcagcagtgACATGAAGGCAGAGCGGCAGCGGAAATCAGACATAAGAGTTCATTGAATAGTTGCAGAAAAAGGTGAACAAATAGGCAGCAGCCAAAGTAAATCATCACTATTGTCCTACTGTTCAGCAGAAAGGGGTCATTACTTTTCTTGAAATGTGTGAGCCCAGTCCTCCTGCGATACAACCCCATGCTGGTGGTAACGTGACCATGGTGGGCATTGGCATCAAGCTGGAGGAGGCGCCTGGAGATGGAGGCGGAGTCAGGGAGTCACAGCAGTCCTCGCCTACATGCGATTGGTCATCACGGCCGCCAGCCGAACGAGACGATCCTGAGAAGTCAAAGACTCGCAGCACTCAGTCCCCTTCGGCAGGTTCACCTAGCAAAgagcaagcacacacacttagtcCCAGCAGTCAGGATGTGCTGAACAGGCCCAACAGCAGGCCCGAGGCCCAGCCGAATGTCAGCGAGGTGCTGCCCACAATTGAGAAAATCCTGAACGCAGACTGGAGAGAGAAGATCTTGGGAAAGGGATTGCAAGGCACTGCCAATGTGAAAGgcactCCAGAAAGCCTGGCTGAGAAGGAGCTTCAGCTGTTGCTGATGATTAACCAGTTGTCTGGGCTGAGGGAGCAGTTGCTGGGAGCACACTCGGAGCAGAGGAACATGGCCGCCCTGCTCCTggagaaacagcagcagcagatggAGCTGGCCCGACAGCAGCAGGAACAGattgctaaacagcagcagcagctgatcCAACAGCAGCACAAGATCAACCTGCTGCAGCAGCAGATCCAGCAGGTGAATTTGCCCTATGTGATGATCCCGGCTTtccacccaaacacacagccacTGCCCGTGTCCTCTGATACACAGATGGGGCTCCCGCTTCAGCCCATTCCCTGCAAGCCAGtgGAATATCCCATGCATCTACTCCCAAACCCTCACTCCACCCCTATCAAAAGATCCAGTGGTACAGTCTTTCGACAGGAGAGCAGTCAGCCATTGAACCTCACAGCCAAACCCAAGAGCCCCCAGAGCCTGGATCTTCCATCTTCCCACCTCCAGTCCACCTACAGGACTAGAGAGCTACAGCACAGCCCCCCTCGACCTGCGCTTAGCCTGGGCTTCTTGGGAGAGGGGGATATTGTGAGCCAAACCATCCATGAAGCCCAGCAGCTGTTGCGAGGAGGCCAAGGTCCAGCGGGCCGAGAGAGGGACAGCAGCACAAGGCTGAATGATTATAAGGAAGCATCCCGAGCTGACCGCATACTCCATGCCGACCGCGCGGAGGACGGACAGTCCATACGGACGAATGACGAGCATCTCAGCAGTGACTCTGAAGGACAGATCGTCTCTGGAGTGGGAGGCTACACCGACAGCCGGAGCTCCTCTTCCGGACACATCAAGAGACCCATGAACGCCTTCATGGTGTGGGCGAAGGACGAACGCCGGCGCATCCTACAAGCCTTTCCTGATATGCATAACTCAAGCATCAGCAAGATCCtggGCTCACGCTGGAAGTCCATGTCCAACCAGGAGAAGCAGCCGTACTATGAGGAGCAGGCCCGGCTGAGCAGACAGCACCTGGAGCGCTACCCAGACTACAAGTACAAGCCCCGGCCGAAGCGCACGTGCATCGTGGAGGGCAGGCGGCTGCGCGTGGGCGAGTACAAAGCCATGATGAAGAGCCGCAGGCAGGAGCAGCGCGCTTCGTACCCATCCAGTCAGTCAGATCAGCAGCTGCACTACTCCACGGGTGAGGCTCCGTACTCCACCAAAACCATGTCCATGACGCTGCCTCTGCACCCTTCCCTTCTGGAGCACTACCTCCCTCGTTCCCTCGAGCCACCCCAAGCCCCACGTGGCCCAGAGGAAGCGGACGGGCCCCGTTCCAAAGCGCCGTACAGCGAGGGAGAAGAGAGTGACGGAGGAGAGCGCAGCGAGGGCGAGCTGGTGGTTCTCACTGACTGACAGGGGGGCGGGATGAGAGAACAGGGTGCTGTGAGGTGAAATGTTTGGGTTTCTGGGGCAAGGTGCTTTCAGGTGTTGAGGGCTCACAGTTCACCGAGGAGTGAATCTTTGCTTTTCCTAGACTACTTTACGCCAGCGGTGATGACAATGTTGAGGGAcggcttattaaaaaaatgctagttatttaaaataataataataataataaacgcaTTTGACAGTCCTTCAGTGCTGCTGTTGGTCAGCGTGCTGCACTTTCCTTCAGTGAAAAGGGCTTTAAAATGCAGATCAGAGGAAGAAATGAGCATATGTGCAGCAGATAAACACTGGGAAATCAGGCTTAACAGTGTTATGCTAAATTGCATAAATGCATACTATTTACACCAAAATGTATCCTGTCAATGTGTAACGCTTACAACTTAGTTTTGCACTAGGGCTACCAGACGAATGGAGCGAACATTAATGGAAACGTATGCAAAAATGCTCTTTTTGGGTGCAAATCTATAGAAAACGTTTCATTATTGGACAAACGATTCCTTTAATTCAAGCTGAACTCAATCAattaatttacaatt
>XM_034314325.1
acacacacacacacacacacacacactcgcgcgcgCACCAGAAAGTGACTTGTGCGTGCAGGGAGACCGGACAGCGCCTAGACGTTAGACGGGAGCGCGAGCTGTAATGATCTCGagctgtgtgtgatttttcatTTGAGCGCGTGCCTCTGATTAAAGCGCTTctcagaaaacaacaacaacaacaacaacatcacaaCACAACAACGCATGCGGTCTGTGTGTCTTCGCTCAGGAATAAGAAGTTCTGGCTTTTTTCAGCACGGTTTCCCCCGGAGTGTGATCAGCGACTACAAATTCATTCTTTCTCATTCAGCCTTCTGGTCGAATCAGCAGTGAGTGATGCAATAATGTGTGAGCCCAGTCCTCCTGCGATACAACCCCATGCTGGTGGTAACGTGACCATGGTGGGCATTGGCATCAAGCTGGAGGAGGCGCCTGGAGATGGAGGCGGAGTCAGGGAGTCACAGCAGTCCTCGCCTACATGCGATTGGTCATCACGGCCGCCAGCCGAACGAGACGATCCTGAGAAGTCAAAGACTCGCAGCACTCAGTCCCCTTCGGCAGGTTCACCTAGCAAAgagcaagcacacacacttagtcCCAGCAGTCAGGATGTGCTGAACAGGCCCAACAGCAGGCCCGAGGCCCAGCCGAATGTCAGCGAGGTGCTGCCCACAATTGAGAAAATCCTGAACGCAGACTGGAGAGAGAAGATCTTGGGAAAGGGATTGCAAGGCACTGCCAATGTGAAAGgcactCCAGAAAGCCTGGCTGAGAAGGAGCTTCAGCTGTTGCTGATGATTAACCAGTTGTCTGGGCTGAGGGAGCAGTTGCTGGGAGCACACTCGGAGCAGAGGAACATGGCCGCCCTGCTCCTggagaaacagcagcagcagatggAGCTGGCCCGACAGCAGCAGGAACAGattgctaaacagcagcagcagctgatcCAACAGCAGCACAAGATCAACCTGCTGCAGCAGCAGATCCAGCAGGTGAATTTGCCCTATGTGATGATCCCGGCTTtccacccaaacacacagccacTGCCCGTGTCCTCTGATACACAGATGGGGCTCCCGCTTCAGCCCATTCCCTGCAAGCCAGtgGAATATCCCATGCATCTACTCCCAAACCCTCACTCCACCCCTATCAAAAGATCCAGTGGTACAGTCTTTCGACAGGAGAGCAGTCAGCCATTGAACCTCACAGCCAAACCCAAGAGCCCCCAGAGCCTGGATCTTCCATCTTCCCACCTCCAGTCCACCTACAGGACTAGAGAGCTACAGCACAGCCCCCCTCGACCTGCGCTTAGCCTGGGCTTCTTGGGAGAGGGGGATATTGTGAGCCAAACCATCCATGAAGCCCAGCAGCTGTTGCGAGGAGGCCAAGGTCCAGCGGGCCGAGAGAGGGACAGCAGCACAAGGCTGAATGATTATAAGGAAGCATCCCGAGCTGACCGCATACTCCATGCCGACCGCGCGGAGGACGGACAGTCCATACGGACGAATGACGAGCATCTCAGCAGTGACTCTGAAGGACAGATCGTCTCTGGAGTGGGAGGCTACACCGACAGCCGGAGCTCCTCTTCCGGACACATCAAGAGACCCATGAACGCCTTCATGGTGTGGGCGAAGGACGAACGCCGGCGCATCCTACAAGCCTTTCCTGATATGCATAACTCAAGCATCAGCAAGATCCtggGCTCACGCTGGAAGTCCATGTCCAACCAGGAGAAGCAGCCGTACTATGAGGAGCAGGCCCGGCTGAGCAGACAGCACCTGGAGCGCTACCCAGACTACAAGTACAAGCCCCGGCCGAAGCGCACGTGCATCGTGGAGGGCAGGCGGCTGCGCGTGGGCGAGTACAAAGCCATGATGAAGAGCCGCAGGCAGGAGCAGCGCGCTTCGTACCCATCCAGTCAGTCAGATCAGCAGCTGCACTACTCCACGGGTGAGGCTCCGTACTCCACCAAAACCATGTCCATGACGCTGCCTCTGCACCCTTCCCTTCTGGAGCACTACCTCCCTCGTTCCCTCGAGCCACCCCAAGCCCCACGTGGCCCAGAGGAAGCGGACGGGCCCCGTTCCAAAGCGCCGTACAGCGAGGGAGAAGAGAGTGACGGAGGAGAGCGCAGCGAGGGCGAGCTGGTGGTTCTCACTGACTGACAGGGGGGCGGGATGAGAGAACAGGGTGCTGTGAGGTGAAATGTTTGGGTTTCTGGGGCAAGGTGCTTTCAGGTGTTGAGGGCTCACAGTTCACCGAGGAGTGAATCTTTGCTTTTCCTAGACTACTTTACGCCAGCGGTGATGACAATGTTGAGGGAcggcttattaaaaaaatgctagttatttaaaataataataataataataaacgcaTTTGACAGTCCTTCAGTGCTGCTGTTGGTCAGCGTGCTGCACTTTCCTTCAGTGAAAAGGGCTTTAAAATGCAGATCAGAGGAAGAAATGAGCATATGTGCAGCAGATAAACACTGGGAAATCAGGCTTAACAGTGTTATGCTAAATTGCATAAATGCATACTATTTACACCAAAATGTATCCTGTCAATGTGTAACGCTTACAACTTAGTTTTGCACTAGGGCTACCAGACGAATGGAGCGAACATTAATGGAAACGTATGCAAAAATGCTCTTTTTGGGTGCAAATCTATAGAAAACGTTTCATTATTGGACAAACGATTCCTTTAATTCAAGCTGAACTCAATCAattaatttacaatt
>XM_034314326.1
ctgtctctctctctcagcagtgACATGAAGGCAGAGCGGCAGCGGAAATCAGACATAAGAGTTCATTGAATAGTTGCAGAAAAAGGTGAACAAATAGGCAGCAGCCAAAGTAAATCATCACTATTGTCCTACTGTTCAGCAGAAAGGGGTCATTACTTTTCTTGAATCAGCGACTACAAATTCATTCTTTCTCATTCAGCCTTCTGGTCGAATCAGCAGTGAGTGATGCAATAATGTGTGAGCCCAGTCCTCCTGCGATACAACCCCATGCTGGTGGTAACGTGACCATGGTGGGCATTGGCATCAAGCTGGAGGAGGCGCCTGGAGATGGAGGCGGAGTCAGGGAGTCACAGCAGTCCTCGCCTACATGCGATTGGTCATCACGGCCGCCAGCCGAACGAGACGATCCTGAGAAGTCAAAGACTCGCAGCACTCAGTCCCCTTCGGCAGGTTCACCTAGCAAAgagcaagcacacacacttagtcCCAGCAGTCAGGATGTGCTGAACAGGCCCAACAGCAGGCCCGAGGCCCAGCCGAATGTCAGCGAGGTGCTGCCCACAATTGAGAAAATCCTGAACGCAGACTGGAGAGAGAAGATCTTGGGAAAGGGATTGCAAGGCACTGCCAATGTGAAAGgcactCCAGAAAGCCTGGCTGAGAAGGAGCTTCAGCTGTTGCTGATGATTAACCAGTTGTCTGGGCTGAGGGAGCAGTTGCTGGGAGCACACTCGGAGCAGAGGAACATGGCCGCCCTGCTCCTggagaaacagcagcagcagatggAGCTGGCCCGACAGCAGCAGGAACAGattgctaaacagcagcagcagctgatcCAACAGCAGCACAAGATCAACCTGCTGCAGCAGCAGATCCAGCAGGTGAATTTGCCCTATGTGATGATCCCGGCTTtccacccaaacacacagccacTGCCCGTGTCCTCTGATACACAGATGGGGCTCCCGCTTCAGCCCATTCCCTGCAAGCCAGtgGAATATCCCATGCATCTACTCCCAAACCCTCACTCCACCCCTATCAAAAGATCCAGTGGTACAGTCTTTCGACAGGAGAGCAGTCAGCCATTGAACCTCACAGCCAAACCCAAGAGCCCCCAGAGCCTGGATCTTCCATCTTCCCACCTCCAGTCCACCTACAGGACTAGAGAGCTACAGCACAGCCCCCCTCGACCTGCGCTTAGCCTGGGCTTCTTGGGAGAGGGGGATATTGTGAGCCAAACCATCCATGAAGCCCAGCAGCTGTTGCGAGGAGGCCAAGGTCCAGCGGGCCGAGAGAGGGACAGCAGCACAAGGCTGAATGATTATAAGGAAGCATCCCGAGCTGACCGCATACTCCATGCCGACCGCGCGGAGGACGGACAGTCCATACGGACGAATGACGAGCATCTCAGCAGTGACTCTGAAGGACAGATCGTCTCTGGAGTGGGAGGCTACACCGACAGCCGGAGCTCCTCTTCCGGACACATCAAGAGACCCATGAACGCCTTCATGGTGTGGGCGAAGGACGAACGCCGGCGCATCCTACAAGCCTTTCCTGATATGCATAACTCAAGCATCAGCAAGATCCtggGCTCACGCTGGAAGTCCATGTCCAACCAGGAGAAGCAGCCGTACTATGAGGAGCAGGCCCGGCTGAGCAGACAGCACCTGGAGCGCTACCCAGACTACAAGTACAAGCCCCGGCCGAAGCGCACGTGCATCGTGGAGGGCAGGCGGCTGCGCGTGGGCGAGTACAAAGCCATGATGAAGAGCCGCAGGCAGGAGCAGCGCGCTTCGTACCCATCCAGTCAGTCAGATCAGCAGCTGCACTACTCCACGGGTGAGGCTCCGTACTCCACCAAAACCATGTCCATGACGCTGCCTCTGCACCCTTCCCTTCTGGAGCACTACCTCCCTCGTTCCCTCGAGCCACCCCAAGCCCCACGTGGCCCAGAGGAAGCGGACGGGCCCCGTTCCAAAGCGCCGTACAGCGAGGGAGAAGAGAGTGACGGAGGAGAGCGCAGCGAGGGCGAGCTGGTGGTTCTCACTGACTGACAGGGGGGCGGGATGAGAGAACAGGGTGCTGTGAGGTGAAATGTTTGGGTTTCTGGGGCAAGGTGCTTTCAGGTGTTGAGGGCTCACAGTTCACCGAGGAGTGAATCTTTGCTTTTCCTAGACTACTTTACGCCAGCGGTGATGACAATGTTGAGGGAcggcttattaaaaaaatgctagttatttaaaataataataataataataaacgcaTTTGACAGTCCTTCAGTGCTGCTGTTGGTCAGCGTGCTGCACTTTCCTTCAGTGAAAAGGGCTTTAAAATGCAGATCAGAGGAAGAAATGAGCATATGTGCAGCAGATAAACACTGGGAAATCAGGCTTAACAGTGTTATGCTAAATTGCATAAATGCATACTATTTACACCAAAATGTATCCTGTCAATGTGTAACGCTTACAACTTAGTTTTGCACTAGGGCTACCAGACGAATGGAGCGAACATTAATGGAAACGTATGCAAAAATGCTCTTTTTGGGTGCAAATCTATAGAAAACGTTTCATTATTGGACAAACGATTCCTTTAATTCAAGCTGAACTCAATCAattaatttacaatt

Function

symbol description
sox13 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in cell fate commitment and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including central nervous system; forebrain neural keel; hindbrain neural plate; neural rod; and solid lens vesicle. Orthologous to human SOX13 (SRY-box transcription factor 13).

GO: NA

KEGG:

id description
K09269 SOX5_6_13; transcription factor SOX5/6/13 (SOX group D)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932730.2 False 2569 mRNA 0.54 14 18722845 18741557
XM_026932733.2 False 2566 mRNA 0.54 14 18722845 18741557
XM_026932734.2 False 2634 mRNA 0.53 14 18724005 18741557
XM_026932735.2 False 2682 mRNA 0.54 14 18708742 18741557
XM_026932736.2 False 2565 mRNA 0.53 14 18715221 18741557
XM_034314325.1 True 2749 mRNA 0.53 15 18708742 18741557
XM_034314326.1 False 2632 mRNA 0.53 15 18715221 18741557

Neighbor

gene id symbol gene type direction distance location
kif17 kif17,LOC108438632 coding upstream 38283 18654169 ~ 18670459 (+)
sh2d5 sh2d5 coding upstream 54703 18646711 ~ 18654039 (+)
hp1bp3 hp1bp3 coding upstream 63224 18637593 ~ 18645518 (+)
pdrg1 pdrg1,LOC107550337,LOC107580937 coding upstream 143931 18560022 ~ 18564811 (+)
si:ch211-266k22.6 LOC108255298 coding upstream 150061 18553402 ~ 18558681 (+)
si:ch211-112f3.4 LOC108254938 coding downstream 49369 18790926 ~ 18803902 (+)
cdk18 cdk18,si:dkey-166c18.1,LOC108254840,LOC107654374,LOC107756627,LOC107698687 coding downstream 231405 18972962 ~ 19037668 (+)
mfsd4aa LOC108254837 coding downstream 301025 19042582 ~ 19059543 (+)
c20h1orf50 c21h1orf50,cunh1orf50,zgc:112255,LOC105895900,LOC107654415,LOC107654365,LOC107565729 coding downstream 596375 19337932 ~ 19343063 (+)
cdc42 cdc42,LOC103465423,LOC100691174,LOC101164400,LOC108248645,LOC107083933,LOC103386293,LOC100697482,LOC107395067 coding downstream 608191 19349748 ~ 19363983 (+)
G310425 NA non-coding upstream 76798 18631715 ~ 18631944 (+)
G310421 NA non-coding upstream 91741 18616690 ~ 18617001 (+)
G310420 NA non-coding upstream 93088 18613515 ~ 18615654 (+)
G310416 NA non-coding upstream 106162 18602378 ~ 18602580 (+)
LOC113538055 NA non-coding upstream 107018 18596516 ~ 18601724 (+)
G310547 NA non-coding downstream 158703 18900260 ~ 18906623 (+)
LOC117599928 NA non-coding downstream 172737 18914294 ~ 18964490 (+)
G310649 NA non-coding downstream 318778 19060335 ~ 19066486 (+)
G310679 NA non-coding downstream 339977 19081534 ~ 19082121 (+)
G310680 NA non-coding downstream 340812 19082369 ~ 19085507 (+)
snrpe snrpe other upstream 16728 18687397 ~ 18692014 (+)
LOC113537865 LOC108280979 other upstream 1445079 17260979 ~ 17263663 (+)
amigo3 amigo3 other upstream 2207058 16489361 ~ 16501684 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other upstream 2908852 15756890 ~ 15799890 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other upstream 4183766 14514592 ~ 14524976 (+)
G310681 LOC108254836 other downstream 345468 19087025 ~ 19087806 (+)
svbp NA other downstream 753201 19494758 ~ 19498671 (+)
phf13 phf13 other downstream 766632 19508189 ~ 19517178 (+)
vamp3 vamp3 other downstream 1027426 19768983 ~ 19783925 (+)
si:dkey-264d12.5 LOC108254816 other downstream 1106910 19848467 ~ 19868481 (+)

Expression


Co-expression Network