LOC113537970 (arf4,LOC108254967)


Basic Information

Item Value
gene id LOC113537970
gene name arf4,LOC108254967
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 16910405 ~ 16912976 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932739.2
gagagagagagagagagagagagagagagagagaggagactgACAGAGACcctgagagagacactgagagctCCAGAGTCTTACTCTCccagcatttctttcttttcatagCCTTTAACAACAGGTTCTTCATCATGGGCAActttttttccaccatcttATCTCGACTCATTGAGAAGAGGCCAGTCAGATTACTGATGGTTGGTCTGGATGCAGCCGGAAAGACTACTGTCCTCTACAAACTCAAACTGGGTGAAGTCGTCACAACGATTCCAACCCTTGGCTTTAACGTTGAGACGGTTGACTACAAGAACATTTCTTTCACCGTGTGGGACGTGGGAGGACAGGACGTCATCAGACGGCTCTGGAGACACTACTTTCAGAACACCATGGGCCTCATCTTTGTGGTGGACAGCAGTGATCGTGAGCGCATCCTGGAAGCTGCTCTGGAGCTGCAGAAGATGctTGAGGAAGATGCGCTGAGGGACGCCGCTGTGTTGGTTCTTGCTAACAAACAGGATTTACCCAACGCGATGCCGGTCCACGAGATGACTGAGAAACTCGGATTGCACGCCATGAAGGGAAGACCTTGGTACGTCCAGTCGACTTGCGCGATAAATGGAACAGGTTTATATGAAGGACTGGACTGGATGACTCTTCAGATCTCCAAACGATAAAATTTACACTAAACGAAAATGACACTGTTTATATCCTTATGCAGAAGTATGTACTGTGTATATCTGAGGGGATTGACTGTATCATGAGCACTTTAAGaggttaatatttttgtaaatatcagACACTATGtagttacttttattttttgagCTTTGCTTACTGTGCCTTTAAATTGATATtagtttaattaaatgtaacatgCCTGTCTATAATATGTTTCTA

Function

symbol description
arf4 Enables GTP binding activity and epidermal growth factor receptor binding activity. Involved in several processes, including activation of phospholipase D activity; protein ADP-ribosylation; and retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Acts upstream of or within dendritic spine development. Located in cytosol; dendritic spine; and ruffle membrane.

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932739.2 True 900 mRNA 0.44 6 16910405 16912976

Neighbor

gene id symbol gene type direction distance location
pde12 pde12 coding upstream 13291 16893231 ~ 16897114 (+)
atp6ap1la atp6ap1l,LOC108254970,LOC107680564 coding upstream 19097 16882002 ~ 16891308 (+)
ccdc66 NA coding upstream 222862 16672820 ~ 16687543 (+)
nicn1 nicn1 coding upstream 1033139 15863456 ~ 15877266 (+)
rbm15b rbm15b coding upstream 1521277 15385294 ~ 15389128 (+)
slmapa slmap coding downstream 31488 16944464 ~ 16998819 (+)
LOC113537897 flnb,LOC107657976,LOC107712990 coding downstream 93631 17006607 ~ 17075644 (+)
LOC113537900 LOC108254753 coding downstream 163570 17076546 ~ 17078049 (+)
abhd6a abhd6,abhd6a,LOC107657977,LOC105904082 coding downstream 173801 17086777 ~ 17100430 (+)
LOC113538050 LOC108254737,LOC108281062 coding downstream 192890 17105866 ~ 17107916 (+)
G309187 NA non-coding upstream 6148 16903857 ~ 16904257 (+)
G309135 rps23,LOC106566095 non-coding upstream 27892 16797131 ~ 16882513 (+)
G309170 NA non-coding upstream 45760 16862146 ~ 16864645 (+)
G309056 NA non-coding upstream 315055 16595137 ~ 16595350 (+)
G308915 NA non-coding upstream 604402 16305796 ~ 16306003 (+)
G309194 NA non-coding downstream 5023 16917999 ~ 16919155 (+)
G309201 NA non-coding downstream 55420 16968396 ~ 16969437 (+)
G309208 NA non-coding downstream 102660 17015636 ~ 17016244 (+)
G309389 NA non-coding downstream 259286 17172262 ~ 17184538 (+)
G309461 inpp1 non-coding downstream 331724 17244700 ~ 17248075 (+)
amigo3 amigo3 other upstream 408721 16489361 ~ 16501684 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other upstream 1110515 15756890 ~ 15799890 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other upstream 2385429 14514592 ~ 14524976 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other upstream 2433588 14179783 ~ 14476817 (+)
ippk ippk,LOC107755999,LOC106566243 other upstream 3217493 13674354 ~ 13692912 (+)
LOC113537865 LOC108280979 other downstream 348003 17260979 ~ 17263663 (+)
snrpe snrpe other downstream 1774421 18687397 ~ 18692014 (+)
G310681 LOC108254836 other downstream 2174049 19087025 ~ 19087806 (+)
svbp NA other downstream 2581782 19494758 ~ 19498671 (+)
phf13 phf13 other downstream 2595213 19508189 ~ 19517178 (+)

Expression


Co-expression Network