hdac11 (hdac11,LOC107749433,LOC107727860)


Basic Information

Item Value
gene id hdac11
gene name hdac11,LOC107749433,LOC107727860
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 11543739 ~ 11583449 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932743.2
CGTCATGACGAGACGCAGGCGCGCGCGGGGGGAAGCAGAGAAGCAGGAACAGCAAAGTGGAACCGAGGGATGGTCGTGACTAGCAGTGACAGCTTTGTTTGGAAACATTTGGGCATGTGAATACAGAATGAATAGATCTTTTAGAAGATGTCAGCGTATATCCTTTGCATAATAAACGACTAGACGACGAAAATAAGCTGACTCTAGAAATAAAGAGCAAATTAAATGGCTAGCAGCTGAAATCTGGGATGCTGTCGTCGACATGTCTAGTAAAGAAAGTTCAGAAGGAAAAAAGGGGTCCCACCGGACAGAGTTGTATGCACAGGTCCCAGCAACATGTCTGCCAATCGTTTACTCACCTGTGTATAACATCACCTTCATGGGTCTGGAGAAACTCCATCCATTTGACGCTGGTAAATGGGGCAAAGTCATCCACTTCTTAAAAGAGGAGCAGTTCATCACAGATGAGACCATTGTTGAAGCAAGGGAGGCCAGTGAGGAGGATCTCCTGGTGGTTCACACCAAACGCTATCTGAGCAGACTCAAGTGGTCTCTGGTGGTTGCCACCATCACAGAAATCCCTCCTCTCGTTTTTCTGCCCAACTTCTTGGTGCAACGCAAGGTGCTGAGACCGTTACGCACCCAGACTGGCGGCACTATTATGgCTGGAAAGCTCGCCATGGACAGAGGATGGGCAATTAACGTGGgAGGAGGCTTTCACCACTGTTCCAGCGACAAGGGAGGGGGTTTCTGTGCGTACGCCGACATCACACTTGCTATTAAGTTTCTGTTCGAGCGAGTGGAGGGCGTCTCCAGGGCCACCATCATCGATCTGGATGCTCATCAGGGAAATGGACATGAGAGGGATTTCTTGGATGACAGACGGGTTTACATAATGGACGTCTACAATCGGCACATCTACCCTGGGGACGGATACGCCAAGAGGGCCATTAAGAGGAAAGTGGAGCTGGACTGGGGCACAGAAGACACCGAGTATCTCCAGAAGGTGGAGCTCCACTGTGAGGGCACATTGAATGAGATCAGACCTGACGTAATTGTGTACAATGCGGGTACTGATATCCTGGATGGTGATCCTCTTGGAGGCCTGGCCATTTCCCCTCAGGGCATCGTGAAGAGAGATGAGATCGTGTTTAGGGCTGCACGGAGGAGAGGGATCCCCATTCTCATGGTGACGTCAGGCGGCTACCAGAAGAAGACAGCACGTATCATTGCTGACTCAATCCTGAACCTGCACAGACAGCATCTGATTGGTGGAGAGGTGTCGGAAGAGGCGGGGCAGTCGATGGTGCCAGTCATGATGAGCAAGTCTGTGTCAGCAGGGGCAACTTTCAATGCCATCTGACGTTTACATCTAGCTCTTACTGGCCTGTTTGTTTAAAGTTAGAAGCACTGTCctcattttttgtttattaacagaaacatttaatCCTGATAAGGTGTGGGGTGATCCAAGGAACTTTATTCTTCAGTTTTAGTGAGGGaaagtttatatatttttaactgcTTCAGCCTATACAACTTTAACCCATGGTACTTTAACAATGAATTAAACCTTCTAGATGAGATTTTAATTCTTTACATTGGTACTTTATGCAATGCTTATTTGCacaatttgaattttattttaaatgatgatAACAAAAGCTACAGCCATTCCAAGCGAGGAAGCAGTTTCTAAATTTACTGTACTATACAAATTTCTTCTACATTACCAAAAGTCATTTGGTACGAAGTACTCCTGTTTATTATAAGAGTCTAACCATAATCTTTACGTGCATTGCCCAtcgttttattactcttattacATTTCTATACTGTTCTAAATGTATAAAGCCATAAATAATGCCAATACTCCATGCCCCAGGTCTAGCACAATCCAACAGCCGTATCCTTAGAGTTAGTCTGCAAGTTTATTGGCTTGGCTTTGTGCGACTGACCAACTGAATGTGTTCTTCTGAAGAGGATTGCTTGCCTCTTACCCAGTTTGCCTTTTTCAGCAGACTTCATTTAACAGTGTTTTTCATGAACCATAACCCTCTCCGTGCCCCCGGCAAGTCCTTGcaagttcttcttcttcatgctGACTCAGCATCTACTTTTAGATATCCAGCATTGAggtaatataaattataaatatgtgcAGTCCTCTTAGGTGATGCTCAATCCACCTCAAAAAAAGCGTAGCTGCTCAAGGCCTCTCCTGACCAGAGGTATCCTCTTACTACCATTTAGCGATTTATTTTATCAAAACACTCAATGTTGACAAGCTAAGAACAAAATAATTAAGTGGAGTTAGCAAGAAATGGCCTTTGAAAACAAGGTCGTCTTGTAAAGTTTAGCTGCCATCTGCTGGGTTTCGTGCTTGGCTGCTGGAGTGAGATTGGGAATAGCTACTAATAAGTGTGATGATAGTGTATGAGAGTAAGATGAAAGATTGAAATACTTTAGCTTGCAGATAGATTGCCAAGGCTAATTTTATAGCTCCTTGAGGAAGATTGAGTATAGGTGCATGCAATTTCAAGATTCAGTACTCTAAATGCAACTTTTTAGCAGGTATTTGGTCAATAAAAGTGTCGTTACCACTACTTAATAACGCACATTAACATGATCATTCTCTTTGCTTTGTATTGATTTTGGTGATGTGTACCTTATTGACATGAATATACTTTAAACTGATTCCTGCACTTATACCCCTCTCAGGGGAGCTtattctgatctttctggaggtctattcaggtgtgtgtaagtgtttaaataCTCATGTACCCacttactgtactgtatgtccaTGCACTACATGTTGTGGCGCCTAAAAAAAAGAGCCATGATATAATatgcattcttatttttttttttggtatctggcattcagatttaaatcacttgtgtgtgagaatggg
>XM_034314370.1
CGTCATGACGAGACGCAGGCGCGCGCGGGGGGAAGCAGAGAAGCAGGAACAGCAAAGTGGAACCGAGGGATGGTCGTGACTAGCAGTGACAGCTTTGTTTGGAAACATTTGGGCATGTGAATACAGAATGAATAGATCTTTTAGAAGATGTCAGCGTATATCCTTTGCATAATAAACGACTAGACGACGAAAATAAGCTGACTCTAGAAATAAAGAGCAAATTAAATGGCTAGCAGGTCCCACCGGACAGAGTTGTATGCACAGGTCCCAGCAACATGTCTGCCAATCGTTTACTCACCTGTGTATAACATCACCTTCATGGGTCTGGAGAAACTCCATCCATTTGACGCTGGTAAATGGGGCAAAGTCATCCACTTCTTAAAAGAGGAGCAGTTCATCACAGATGAGACCATTGTTGAAGCAAGGGAGGCCAGTGAGGAGGATCTCCTGGTGGTTCACACCAAACGCTATCTGAGCAGACTCAAGTGGTCTCTGGTGGTTGCCACCATCACAGAAATCCCTCCTCTCGTTTTTCTGCCCAACTTCTTGGTGCAACGCAAGGTGCTGAGACCGTTACGCACCCAGACTGGCGGCACTATTATGgCTGGAAAGCTCGCCATGGACAGAGGATGGGCAATTAACGTGGgAGGAGGCTTTCACCACTGTTCCAGCGACAAGGGAGGGGGTTTCTGTGCGTACGCCGACATCACACTTGCTATTAAGTTTCTGTTCGAGCGAGTGGAGGGCGTCTCCAGGGCCACCATCATCGATCTGGATGCTCATCAGGGAAATGGACATGAGAGGGATTTCTTGGATGACAGACGGGTTTACATAATGGACGTCTACAATCGGCACATCTACCCTGGGGACGGATACGCCAAGAGGGCCATTAAGAGGAAAGTGGAGCTGGACTGGGGCACAGAAGACACCGAGTATCTCCAGAAGGTGGAGCTCCACTGTGAGGGCACATTGAATGAGATCAGACCTGACGTAATTGTGTACAATGCGGGTACTGATATCCTGGATGGTGATCCTCTTGGAGGCCTGGCCATTTCCCCTCAGGGCATCGTGAAGAGAGATGAGATCGTGTTTAGGGCTGCACGGAGGAGAGGGATCCCCATTCTCATGGTGACGTCAGGCGGCTACCAGAAGAAGACAGCACGTATCATTGCTGACTCAATCCTGAACCTGCACAGACAGCATCTGATTGGTGGAGAGGTGTCGGAAGAGGCGGGGCAGTCGATGGTGCCAGTCATGATGAGCAAGTCTGTGTCAGCAGGGGCAACTTTCAATGCCATCTGACGTTTACATCTAGCTCTTACTGGCCTGTTTGTTTAAAGTTAGAAGCACTGTCctcattttttgtttattaacagaaacatttaatCCTGATAAGGTGTGGGGTGATCCAAGGAACTTTATTCTTCAGTTTTAGTGAGGGaaagtttatatatttttaactgcTTCAGCCTATACAACTTTAACCCATGGTACTTTAACAATGAATTAAACCTTCTAGATGAGATTTTAATTCTTTACATTGGTACTTTATGCAATGCTTATTTGCacaatttgaattttattttaaatgatgatAACAAAAGCTACAGCCATTCCAAGCGAGGAAGCAGTTTCTAAATTTACTGTACTATACAAATTTCTTCTACATTACCAAAAGTCATTTGGTACGAAGTACTCCTGTTTATTATAAGAGTCTAACCATAATCTTTACGTGCATTGCCCAtcgttttattactcttattacATTTCTATACTGTTCTAAATGTATAAAGCCATAAATAATGCCAATACTCCATGCCCCAGGTCTAGCACAATCCAACAGCCGTATCCTTAGAGTTAGTCTGCAAGTTTATTGGCTTGGCTTTGTGCGACTGACCAACTGAATGTGTTCTTCTGAAGAGGATTGCTTGCCTCTTACCCAGTTTGCCTTTTTCAGCAGACTTCATTTAACAGTGTTTTTCATGAACCATAACCCTCTCCGTGCCCCCGGCAAGTCCTTGcaagttcttcttcttcatgctGACTCAGCATCTACTTTTAGATATCCAGCATTGAggtaatataaattataaatatgtgcAGTCCTCTTAGGTGATGCTCAATCCACCTCAAAAAAAGCGTAGCTGCTCAAGGCCTCTCCTGACCAGAGGTATCCTCTTACTACCATTTAGCGATTTATTTTATCAAAACACTCAATGTTGACAAGCTAAGAACAAAATAATTAAGTGGAGTTAGCAAGAAATGGCCTTTGAAAACAAGGTCGTCTTGTAAAGTTTAGCTGCCATCTGCTGGGTTTCGTGCTTGGCTGCTGGAGTGAGATTGGGAATAGCTACTAATAAGTGTGATGATAGTGTATGAGAGTAAGATGAAAGATTGAAATACTTTAGCTTGCAGATAGATTGCCAAGGCTAATTTTATAGCTCCTTGAGGAAGATTGAGTATAGGTGCATGCAATTTCAAGATTCAGTACTCTAAATGCAACTTTTTAGCAGGTATTTGGTCAATAAAAGTGTCGTTACCACTACTTAATAACGCACATTAACATGATCATTCTCTTTGCTTTGTATTGATTTTGGTGATGTGTACCTTATTGACATGAATATACTTTAAACTGATTCCTGCACTTATACCCCTCTCAGGGGAGCTtattctgatctttctggaggtctattcaggtgtgtgtaagtgtttaaataCTCATGTACCCacttactgtactgtatgtccaTGCACTACATGTTGTGGCGCCTAAAAAAAAGAGCCATGATATAATatgcattcttatttttttttttggtatctggcattcagatttaaatcacttgtgtgtgagaatggg

Function

symbol description
hdac11 Predicted to enable histone deacetylase activity. Predicted to act upstream of or within histone deacetylation. Predicted to be located in nucleus. Orthologous to human HDAC11 (histone deacetylase 11).

NR:

description
histone deacetylase 11

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K11418 HDAC11; histone deacetylase 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932743.2 True 2921 mRNA 0.43 11 11543739 11583449
XM_034314370.1 False 2860 mRNA 0.43 10 11543739 11583449

Neighbor

gene id symbol gene type direction distance location
cfap92 NA coding upstream 270260 11256014 ~ 11273479 (+)
map1lc3a map1lc3a,LOC107551126 coding upstream 308478 11224148 ~ 11235261 (+)
fer1l4 LOC108254855,LOC108424672,LOC107727820,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC105912144 coding upstream 403426 11107291 ~ 11140313 (+)
cpne1 LOC108254857,LOC108424674,LOC107727818,LOC107691350,LOC107685660,LOC107749446 coding upstream 436574 11079060 ~ 11107165 (+)
rbm12 rbm12,LOC108424674,LOC107749443,LOC107685660,LOC107551121,LOC107727817 coding upstream 457046 11079081 ~ 11086693 (+)
fbln2 fbln2,LOC108254974 coding downstream 25473 11608922 ~ 11671459 (+)
barx1 barx1,LOC107727794,LOC107685643,LOC107691398 coding downstream 210562 11794011 ~ 11797434 (+)
alpl alpl,LOC107691326,LOC107685635 coding downstream 484175 12067624 ~ 12096756 (+)
nmur3 LOC108281099,LOC108439501 coding downstream 593641 12177090 ~ 12185144 (+)
ephb2b ephb2b,LOC108255231,LOC108439490,LOC107727812,LOC107568432,LOC107691322,LOC101487531,LOC107685632,LOC102295218,LOC100712288 coding downstream 682256 12265705 ~ 12413095 (+)
G306106 NA non-coding upstream 601 11542933 ~ 11543138 (+)
G305920 NA non-coding upstream 113694 11429819 ~ 11430045 (+)
G305903 NA non-coding upstream 133443 11409531 ~ 11410296 (+)
LOC117599893 NA non-coding upstream 188662 11352876 ~ 11355077 (+)
G305864 iqsec1,LOC107551128,LOC107749434 non-coding upstream 226239 11317187 ~ 11317500 (+)
G306145 NA non-coding downstream 64851 11648300 ~ 11661421 (+)
G306199 NA non-coding downstream 168776 11752225 ~ 11754031 (+)
LOC113537887 NA non-coding downstream 253889 11837338 ~ 11843605 (+)
G306284 NA non-coding downstream 339020 11922469 ~ 11922676 (+)
G306286 NA non-coding downstream 341412 11924861 ~ 11925433 (+)
G306103 NA other upstream 27926 11515059 ~ 11515813 (+)
G305955 iqsec1 other upstream 62639 11480669 ~ 11481100 (+)
G305869 NA other upstream 217379 11325604 ~ 11326360 (+)
G305863 iqsec1,iqsec1b other upstream 228303 11314184 ~ 11315436 (+)
dynlrb1 dynlrb1,LOC106565026 other upstream 322199 11214752 ~ 11221540 (+)
G306480 tuba1c,LOC103148207,LOC106920718,LOC102311436,LOC101065103 other downstream 874152 12457601 ~ 12462536 (+)
ippk ippk,LOC107755999,LOC106566243 other downstream 2090905 13674354 ~ 13692912 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other downstream 2596334 14179783 ~ 14476817 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other downstream 2931143 14514592 ~ 14524976 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other downstream 4173441 15756890 ~ 15799890 (+)

Expression


Co-expression Network