map1lc3a (map1lc3a,LOC107551126)


Basic Information

Item Value
gene id map1lc3a
gene name map1lc3a,LOC107551126
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 11224148 ~ 11235261 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932751.2
CGCGCCTGGGTTCTTGCATTGTGCAGTTGTTTTGACACACAGCGAGTCTGAAGATCAGCCTGAAACCTTCAGCGAGCTCGGAGCAAAACATTAAACAGCTCGGAAAGTGCTGAAATATCTGCTTCTCTCAGACTGCAGGCATGCCATCCGACAGACCTTTTAAACAGCGGAGGACATTCGCTGATCGCTGCAAGGAAGTGCAGCAGATACGAGAGCAGCATCCTAATAAAATTCCGGTTATCATTGAAAGGTATAAGGGAGAAAAGCAGCTTCCTGTTTTGGACAAGACCAAGTTTCTAGTGCCTGATCATGTCAACATGAGTGAACTGGTGAAGATCATCAGGCGTCGACTGCAGCTGAACCCCACTCAGGCCTTCTTCCTCTTGATCAACCAGCACAGCATGGTCAGTGTGTCCACCCCTATCTCCGAGATCTATGAGCAGGAGCGTGATGAAGATGGCTTCCTGTACATGGTCTATGCCTCCCAGGAGACATTTGGCTGCTAAGTTCTCCACTGGCCTCGTGTGATGGAGAAAGCCAAAAGAAGCCAGGAGAAAGAAAGCAGGTTTCAGCTAACCGTAGCCCTGtgatctctctgtttctctctgtaagACGTACCTTTCTCCTGCCATCATTACGTTAACACCACGTTCATTGTGTCTCATTATGACACGAGTGTGCATATGACAGCACTACTGTACCTGTTAGTTTGCCCGTTTAACCTTTTTATCAACTTGACTCTCTTATTCCACTTAGTAATATTAGCCTGTGTGTGTAAGGAGCTGTTGCGCTCTGGCCCTGTTTGTGCTTCAGTTGATTCTATGTTCTttgattttattgcttttattagGGCCAGTGTCTAAAATAATTAGTAACACGTTTCATGTCAATGTAAGTAGGCGAGTGTCtgttgtattcttttttttttttctttttaaagatttgTCTGTAGTTTTCCAGTAGTTTAGGTGATCCATTTTCCTGCTTGCTTGTAGTGATCAGCAAATCAGTGCTGGAGTGAGATTTTAAGATATTTcttcaaaagcaaaaataaaatcttagtAAACTCCTATAAAATTTTATGTATTAGCTTTTAAAGTAGGGCCTCAGTGTATGTACAGGCCCTCCAAATAAGGCTCCAAACCAATCTTCAGAACTTGTAATACTTATTCTCTTGTACCCTGCCCCATGTTCCCTTCCCTTTCAGTGAAATTGCCGTACCTCTGTTCAATTCAGAATTAAAGTCAATATAGGAGAATTGAGCTAGgaaagagaaaacaggaagcagctgAGCTGGCTAATGCTGCTTATGGTTTCATTAATGCTAAATATGGGTTGGAGTAGTTTTTTTAGTCCTTAATGTCCCCAGGTTTAAAATGTGGCGTGTGACTGTGGCCTGGAGCGCATATGAAACAGCAGCCTGTACTGTTAGCTTGtggacctaaaaaaaaaaaacaaaaacagctaaACAGATCCCCAGTGACCGTAATTCAGCCCTGCTGTATTTTGTGATAGGTCCTGTTAACTCTATTAAGTTTAAATAATATGCTTCTTTTGCACAAATAAACAGCCAAGAGGATAAACTTAATTTTCAAACAATTTTAGCACACAGTTGTAGTATGTATcttgtttctttcctttgtATCACTATGCGATATTTTTGCCTTCCGTTCCAACTTCAATGAAGGATTTATGATGCACTACATAGATTGCATGTTTTTCTCAAccttttttatatattgattTATGCTATTAgatttgttaattatttctttatttaaagtagaaaaaaaagtctttttagatgttttcaaACCAAAAGAATGAAATTAATATGTATCTATGTTTGAAACACAAGTGTATATAAACTATCATATGATTAGC

Function

symbol description
map1lc3a Predicted to enable microtubule binding activity; phosphatidylethanolamine binding activity; and ubiquitin protein ligase binding activity. Predicted to be involved in autophagy of mitochondrion; cellular response to nitrogen starvation; and macroautophagy. Predicted to act upstream of or within autophagy. Predicted to be located in membrane. Predicted to be active in autophagosome membrane and cytosol. Is expressed in forerunner cell group; nervous system; neural tube; and tail bud. Human ortholog(s) of this gene implicated in glioblastoma. Orthologous to human MAP1LC3A (microtubule associated protein 1 light chain 3 alpha).

NR:

description
microtubule-associated proteins 1A/1B light chain 3A

GO:

id name namespace
GO:0006914 autophagy biological_process

KEGG:

id description
K10435 MAP1LC; microtubule-associated protein 1 light chain

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932751.2 True 1884 mRNA 0.40 4 11224148 11235261

Neighbor

gene id symbol gene type direction distance location
fer1l4 LOC108254855,LOC108424672,LOC107727820,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC105912144 coding upstream 83835 11107291 ~ 11140313 (+)
cpne1 LOC108254857,LOC108424674,LOC107727818,LOC107691350,LOC107685660,LOC107749446 coding upstream 116983 11079060 ~ 11107165 (+)
rbm12 rbm12,LOC108424674,LOC107749443,LOC107685660,LOC107551121,LOC107727817 coding upstream 137455 11079081 ~ 11086693 (+)
ppcs ppcs coding upstream 160047 11061008 ~ 11064101 (+)
mon1bb LOC108255044,LOC107564673,LOC107727858,LOC108444170,LOC107691359,LOC107749456,LOC107685668 coding upstream 934333 10280520 ~ 10289815 (+)
cfap92 NA coding downstream 20753 11256014 ~ 11273479 (+)
hdac11 hdac11,LOC107749433,LOC107727860 coding downstream 308478 11543739 ~ 11583449 (+)
fbln2 fbln2,LOC108254974 coding downstream 373661 11608922 ~ 11671459 (+)
barx1 barx1,LOC107727794,LOC107685643,LOC107691398 coding downstream 558750 11794011 ~ 11797434 (+)
alpl alpl,LOC107691326,LOC107685635 coding downstream 832363 12067624 ~ 12096756 (+)
G305735 NA non-coding upstream 89424 11134515 ~ 11134724 (+)
G305734 NA non-coding upstream 94661 11129288 ~ 11129487 (+)
LOC113538022 NA non-coding upstream 148558 11073762 ~ 11075590 (+)
G305642 NA non-coding upstream 423917 10797969 ~ 10800231 (+)
G305584 NA non-coding upstream 551574 10667197 ~ 10672574 (+)
G305849 NA non-coding downstream 38324 11273585 ~ 11275616 (+)
G305833 NA non-coding downstream 63061 11298322 ~ 11300713 (+)
G305834 NA non-coding downstream 68029 11303290 ~ 11304633 (+)
G305865 NA non-coding downstream 75609 11310870 ~ 11312417 (+)
G305864 iqsec1,LOC107551128,LOC107749434 non-coding downstream 81926 11317187 ~ 11317500 (+)
dynlrb1 dynlrb1,LOC106565026 other upstream 2608 11214752 ~ 11221540 (+)
unm_sa1614 LOC108254916,LOC108424671,LOC107566077,LOC107691346 other upstream 45675 11141236 ~ 11178473 (+)
G305727 NA other upstream 111630 11111739 ~ 11112518 (+)
LOC113539694 LOC105418794,LOC108431938,LOC108412963,LOC105419408,LOC108415465,LOC106522608 other upstream 450706 10764274 ~ 10773442 (+)
G305515 NA other upstream 710878 10512671 ~ 10513270 (+)
G305863 iqsec1,iqsec1b other downstream 78923 11314184 ~ 11315436 (+)
G305869 NA other downstream 90343 11325604 ~ 11326360 (+)
G305955 iqsec1 other downstream 245408 11480669 ~ 11481100 (+)
G306103 NA other downstream 279798 11515059 ~ 11515813 (+)
G306480 tuba1c,LOC103148207,LOC106920718,LOC102311436,LOC101065103 other downstream 1222340 12457601 ~ 12462536 (+)

Expression


Co-expression Network